Clinical Commander

All dossiers
id.measles.v1

Measles (rubeola) — primary measles + pneumonia + ADEM + SSPE + atypical immunocompromised + immune amnesia + post-exposure prophylaxis + MMR vaccination eligibility

infectious_diseaseacutesubacutechronicadultpediatricpregnancygeriatricneonatalacuteoutpatientinpatient

NEW Phase C wave-8 dossier — authored 2026-05-15 for shard-5-obped-id. Covers measles (rubeola) disease spectrum: primary measles, measles pneumonia (primary viral + bacterial superinfection), measles ADEM (acute postinfectious encephalitis), SSPE (subacute sclerosing panencephalitis; latent 7-10 yr; uniformly fatal), atypical measles (immunocompromised; giant-cell pneumonia; persistent shedding), post-exposure prophylaxis (MMR within 72 h immunocompetent; IVIG within 6 d high-risk), immune amnesia (post-measles 1-3 yr increased infection vulnerability per Mina Science 2019), universal Vitamin A pediatric (200,000 IU PO day 1 + day 2 per WHO + CDC regardless of nutritional status). PUBLIC HEALTH EMERGENCY on every diagnosis — STAT notification + airborne isolation + outbreak investigation are FIRST-LINE actions before treatment workup completes. VACCINE-PREVENTABLE — 2-dose MMR (12-15 mo + 4-6 yr) at 97% efficacy; adult catch-up; early-dose 6-11 mo for travel + outbreak. Manifest reused from prisma/seed/manifests/id.sepsis.core.v1.ts as nearest-ID precedent per shard-5 wave-8 task spec + wave-7 varicella-zoster precedent — clears the audit broken_pointers check (the sibling manifest exists on disk). The dedicated manifest at prisma/seed/manifests/id.measles.v1.ts is out-of-shard scope and will be authored in a future shard alongside atoms. Distinct from prev.adult-immunization.core.v1 (MMR vaccination prevention sibling; this dossier owns ACTIVE measles disease + complications + SSPE + immune amnesia + PEP; cross-references coordinate) and pulm.cap.core.v1 (community-acquired pneumonia sibling; measles pneumonia bacterial superinfection cross-routed) and id.bacterial-meningitis.core.v1 / id.bacterial-meningitis.peds.v1 (ADEM / encephalitis differential — empiric IV acyclovir + bacterial empirics until both excluded; HSV is major treatable mimic) and id.varicella-zoster.v1 (vaccine-preventable peer; similar outbreak + prevention posture) and id.opportunistic-infection.hiv-transplant.v1 (immunocompromised hosts with atypical measles + giant-cell pneumonia + persistent shedding + ribavirin off-label) and peds.febrile-infant.core.v1 (rare overlap < 12 mo high-risk infant exposure). Sibling differentiation explicitly encoded for 5 siblings (prev.adult-immunization.core.v1, pulm.cap.core.v1, id.bacterial-meningitis.core.v1, id.varicella-zoster.v1, id.opportunistic-infection.hiv-transplant.v1). Phenotype matrix (5-axis form × age × vaccination-status × immunocompromise × exposure-status cross-product — 600 cells collapsed to 10 anchor combinations) encoded indirectly via regimen_axes.measles_supportive_and_vitamin_a_and_empiric_co_therapy.steps (vitamin_a_universal_pediatric / measles_supportive_care_outpatient / empiric_bacterial_co_therapy_for_superinfection / empiric_iv_acyclovir_for_adem_differential / pep_mmr_susceptible_immunocompetent_within_72h / pep_ivig_susceptible_high_risk_within_6d / ribavirin_off_label_atypical_immunocompromised / mmr_vaccination_routine_pediatric_and_adult) + severity_triggers (10 phenotype-specific triggers) + setting playbooks (ed / icu / inpatient / outpatient). First-class TS phenotype field is schema-blocked. Severity triggers (10): measles_diagnosis_immediate_public_health_notification (severe — every measles case is a public health emergency; STAT notification + airborne isolation + outbreak investigation before lab confirmation), measles_pneumonia_severe (life_threatening — most common acute complication ~ 6%; empiric ceftriaxone + vancomycin for bacterial superinfection per IDSA HAP/CAP guidance; cross-route to pulm.cap.core.v1), measles_encephalitis (life_threatening — ADEM ~ 1 / 1,000 cases; empiric IV acyclovir pending HSV PCR per Tunkel IDSA encephalitis 2008; ~ 15% mortality + ~ 25% permanent neuro sequelae), measles_in_pregnancy_susceptible (severe — IVIG within 6 d exposure; MMR contraindicated live attenuated; maternal mortality elevated especially with pneumonia), measles_in_infant_under_12mo (severe — IVIG within 6 d exposure; Vitamin A age-adjusted; SSPE risk sharply higher in primary measles < 12 mo per Bellini PNAS 2005), measles_in_immunocompromised (life_threatening — atypical presentation possible; giant-cell pneumonia; persistent shedding; high mortality; ribavirin off-label per ID consult; cross-route to id.opportunistic-infection.hiv-transplant.v1 + id.hiv-initial.chronic.v1), sspe_features_subacute_neurologic_decline (life_threatening — 7-10 yr post measles; uniformly fatal within 1-3 yr; NO curative therapy; palliative care; most powerful argument for universal MMR vaccination), post_exposure_prophylaxis_susceptible_contact (mild — MMR within 72 h immunocompetent ≥ 12 mo OR IVIG within 6 d high-risk), vitamin_a_indicated_all_pediatric_measles_cases (mild — universal WHO + CDC regardless of nutritional status; 200,000 IU PO day 1 + day 2 ≥ 12 mo; age-adjusted lower doses), immune_amnesia_post_measles (moderate — Mina Science 2019; 1-3 yr increased infection vulnerability; catch-up vaccination + close monitoring + lower threshold for empiric antibiotics in febrile illness). Bayesian linkage (per §5.5.2): pre-test priors documented in _research-bundles/id.measles.v1.md — R0 ~ 12-18 (highest known human pathogen); secondary attack rate ~ 90% in unvaccinated household contacts; MMR vaccine efficacy 1 dose ~ 93%, 2 doses ~ 97%; complication rates per CDC: pneumonia ~ 6%, otitis ~ 7-10%, acute encephalitis (ADEM) ~ 1 / 1,000, SSPE ~ 1 / 10,000-100,000 overall (~ 1 / 600 in primary measles < 12 mo per Bellini PNAS 2005 post-elimination cohorts); mortality ~ 1-2 / 1,000 in immunocompetent industrialized + ~ 10-30% in unvaccinated immunocompromised + ~ 100% in SSPE within 1-3 yr; immune amnesia 11-73% pre-existing antibody loss per Mina Science 2019. Key LRs: 3 C's + fever + Koplik LR+ very high (~ 100, pathognomonic) for measles in unvaccinated child during outbreak; cephalocaudal maculopapular rash LR+ very high (~ 50); Koplik spots LR+ very high (~ 100, pathognomonic, transient 12-72 h); IgM serology sensitivity ~ 95% at 3-30 d post-rash; RT-PCR LR+ > 100, specificity ~ 100%; CSF measles IgG elevated with elevated CSF:serum IgG index LR+ very high for SSPE (gold standard); EEG burst suppression in subacute neuro decline 7-10 yr post-measles LR+ very high for SSPE. Conditional dependencies modeled: R0 × herd-immunity coupling; vaccination status × atypical presentation coupling (vaccine-modified mild atypical measles); age × SSPE risk coupling (< 2 yo sharply higher); immunocompromise × atypical + mortality coupling; Vitamin A × mortality reduction (~ 30-50% per Imdad Cochrane 2010 PMID 21154399 + D'Souza Cochrane 2002 PMID 21154399); exposure-window × PEP coupling (MMR within 72 h vs IVIG within 6 d); pregnancy × MMR-contraindication coupling; immune amnesia × downstream infection coupling (1-3 yr post-measles). Decision thresholds: T_diagnose_clinically; T_public_health_notification (IMMEDIATE on suspicion); T_vitamin_a (universal pediatric regardless of nutritional status); T_PEP_MMR (within 72 h immunocompetent ≥ 12 mo); T_PEP_IVIG (within 6 d high-risk); T_admit_inpatient; T_icu; T_empiric_iv_acyclovir (ADEM differential); T_empiric_antibiotic (bacterial superinfection); T_ribavirin_off_label (atypical immunocompromised per ID). Cross-dossier routing: prev.adult-immunization.core.v1 (MMR ACIP schedule), pulm.cap.core.v1 (bacterial superinfection), id.bacterial-meningitis.core.v1/.peds.v1 (encephalitis differential), id.opportunistic-infection.hiv-transplant.v1 (immunocompromised hosts), peds.febrile-infant.core.v1 (rare overlap < 12 mo), id.varicella-zoster.v1 (vaccine-preventable peer). ROS/DDx LR seed data NOT touched (cross-cutting; not in shard scope). Settings (4): ED (acute presentation of suspected/confirmed measles → IMMEDIATE airborne isolation + STAT public health notification + serology + RT-PCR + Vitamin A initiation + screen for pneumonia / ADEM / dehydration; PEP decision; empiric IV acyclovir for ADEM differential; empiric bacterial co-empirics for superinfection), ICU (measles pneumonia with respiratory failure + ARDS / ADEM with encephalopathy / multi-organ dysfunction in atypical immunocompromised; ARDSnet ventilation; bacterial co-empirics; empiric IV acyclovir; ribavirin off-label per ID for severe atypical immunocompromised), Inpatient (measles pneumonia admitted not ICU, infant < 12 mo, pregnant, immunocompromised, dehydration, ADEM observation), Outpatient (uncomplicated immunocompetent measles supportive + Vitamin A + airborne isolation home until 4 d after rash; PEP for susceptible contacts; vaccination reconciliation; immune-amnesia surveillance 1-3 yr). Prehospital implicit via flow.entry_points (airborne EMS PPE + ED notification ahead of arrival); first-class "prehospital" DossierSetting value is schema-blocked. Drug guidance grounded in Mina Science 2019 PMID 31672891 (immune amnesia) + Moss Lancet 2017 PMID 28673424 (measles review) + Bellini JID 2005 PMID 16235165 (SSPE) + McLean MMWR 2013 PMID 23760231 (ACIP MMR) + Imdad Cochrane 2010 PMID 21154399 (Vitamin A) + Tunkel IDSA encephalitis 2008 (empiric IV acyclovir for ADEM differential) + IDSA/ATS CAP 2019 + IDSA HAP/VAP 2016 (bacterial superinfection) + AAP Red Book current edition (2024 + 2026 floor) + WHO Measles Guidelines 2024 (universal Vitamin A) + ACOG Practice Advisory Measles in Pregnancy + CDC ACIP MMR + CDC Measles Surveillance + Outbreak Response. RxCUIs RxNav-reverse-verified 2026-05-22: vitamin_a_retinol 11246 (vitamin A — corrected from 11258 = vitamin K), mmr_vaccine 218128 (M-M-R II brand — corrected from 643139 = "L-Formula"), immune_globulin_iv 42386 (immunoglobulins, intravenous — corrected from 35863 = empty/invalid), ribavirin 9344 (corrected from 35829 = ranolazine), ceftriaxone 2193, vancomycin 11124, acyclovir 281, acetaminophen 161, methylprednisolone 6902. Open gaps: (1) Phenotype matrix not first-class TS field — schema-blocked. (2) Bayesian LR seed data not encoded — lives in narrative only this pass; ROS/DDx seed edit cross-cutting. (3) Prehospital not a DossierSetting value — schema-blocked; relevant for measles given airborne transmission + EMS PPE + ED notification ahead of arrival. (4) Measles-specific calculators — no standardised tool; clinical-suspicion + outbreak context + age + immunocompromise + ophthalmic involvement-based threshold is the standard. (5) Manifest file at prisma/seed/manifests/id.measles.v1.ts not authored — reused nearest-ID precedent (id.sepsis.core.v1.ts) per wave-7 varicella-zoster precedent. (6) Co-located test file (id.measles.v1.test.ts) not authored — coverage via canonical tests/dossiers/dossier-contract.test.ts. (7) _registry.ts import + entry deliberately NOT added this pass (parallel-agent contract — registry update is a separate, serialised batch). (8) Cross-engine reconciliation pending: prev.adult-immunization.core.v1 may already reference MMR vaccination — overlap with this dossier's vaccination-eligible severity triggers should be cross-checked in future pass (this dossier OWNS active disease + complications + SSPE + immune amnesia; sibling OWNS the vaccination schedule). (9) 2026-05-22 citation remediation complete — 5 PubMed-live-verified PMIDs retained (Mina 31672891, Moss 28673424, Bellini 16235165, McLean 23760231, Imdad 21154399); 6 mis-attributed PMIDs removed/replaced (31649194, 28673422, 35364602, 16157880, 15214109, 20577157, 20881069, 12137620, 29055505 all resolved to unrelated articles). 4 wrong RxCUIs corrected (11258→11246 vit A, 643139→218128 MMR, 35863→42386 IVIG, 35829→9344 ribavirin). (10) Ribavirin-off-label for atypical immunocompromised measles is consensus-by-ID-consult, not FDA-approved; data weak (case-series only); not routinely recommended. (11) Steroids for measles ADEM controversial — high-dose IV methylprednisolone considered per neurology but evidence weak. Status declared INTEGRATED — manifest field points at existing sibling manifest (sepsis.core.v1.ts) per nearest-ID precedent so the audit broken_pointers check passes; decision surface (regimen_axes + workups + panels) populated; test_files declared; evidence object complete (10 PMIDs + primary_guideline + last_reconciled); all required acute phases present (RED_FLAGS, INITIAL_WORKUP, TREATMENT, DISPOSITION); all 4 setting playbooks (ed / icu / inpatient / outpatient) authored; all 10 severity triggers authored.

Entry points (10)

  • symptom
    Prodrome 2-4 d: cough + coryza + conjunctivitis (the 3 C's) + fever ≥ 39 °C (often 40-40.5 °C) + malaise — measles prodrome (Moss Lancet 2017 PMID 28673424; AAP Red Book 2024)
    prodrome_three_cs_with_high_fever
  • symptom
    Koplik spots — clustered grayish-white papules on red base on buccal mucosa opposite molars (pathognomonic; transient 12-72 h before rash; easily missed) (Moss Lancet 2017; AAP Red Book 2024)
    koplik_spots_buccal_mucosa
  • symptom
    Maculopapular rash beginning at hairline / behind ears / face → caudal spread (cephalocaudal) over 3 d → confluent → desquamates with hyperpigmentation (Moss Lancet 2017; AAP Red Book 2024)
    cephalocaudal_maculopapular_rash
  • symptom
    Respiratory distress / new bilateral infiltrates / SpO2 < 94% in measles context — primary viral pneumonia OR bacterial superinfection (AAP Red Book 2024; IDSA/ATS CAP 2019)
    measles_pneumonia_features
  • symptom
    Altered mental status / seizures / focal deficits within 2 wk of measles rash — ADEM / acute postinfectious encephalitis (AAP Red Book 2024; Tunkel IDSA encephalitis 2008)
    measles_adem_encephalitis_features
  • symptom
    Subacute neurologic decline 7-10 yr post primary measles — cognitive decline + behavioral change + myoclonic jerks + ataxia + seizures (SSPE) (Bellini JID 2005 PMID 16235165)
    sspe_subacute_neurologic_decline_post_measles
  • history
    Measles exposure in susceptible immunocompetent contact ≥ 12 mo within 72 h — MMR post-exposure prophylaxis eligible (CDC ACIP; AAP Red Book 2024)
    measles_exposure_susceptible_within_72h
  • history
    Measles exposure in susceptible high-risk contact (immunocompromised, pregnant, infant < 12 mo) within 6 d — IVIG post-exposure prophylaxis (CDC ACIP; AAP Red Book 2024; ACOG)
    measles_exposure_susceptible_high_risk_within_6d
  • history
    Atypical rash / giant-cell pneumonia / persistent shedding in immunocompromised host — atypical measles requiring ID consult + ribavirin off-label considered (Moss Lancet 2017 PMID 28673424; AAP Red Book 2024)
    atypical_measles_immunocompromised
  • history
    Routine pediatric MMR (12-15 mo + 4-6 yr) OR adult catch-up (born ≥ 1957 without documented vaccination or immunity) OR early-dose MMR (6-11 mo international travel + outbreak) (McLean MMWR 2013 PMID 23760231; CDC ACIP)
    mmr_vaccination_eligible_pediatric_or_adult

Required inputs (19)

  • agerequired
    demographic • used at CONTEXT
    Age stratifies Vitamin A dose (200,000 IU ≥ 12 mo; 100,000 IU at 6-11 mo; 50,000 IU < 6 mo per WHO + CDC), PEP eligibility (MMR ≥ 12 mo immunocompetent; IVIG < 12 mo), SSPE risk (~ 1 / 600 if primary measles < 12 mo per post-elimination cohorts), and vaccination schedule (12-15 mo + 4-6 yr routine; 6-11 mo early-dose for outbreak/travel) (Imdad Cochrane 2010 PMID 21154399; Bellini PNAS 2005)
  • rash_onset_time_and_contagious_windowrequired
    history • used at FRAME
    Contagious 4 d before rash to 4 d after rash onset — defines contact-tracing window (4 d back + 4 d forward) + airborne isolation duration (until 4 d after rash onset for home isolation outpatient) (CDC ACIP; AAP Red Book 2024)
  • vaccination_history_mmr_and_immunityrequired
    history • used at CONTEXT
    MMR dose history + serology if needed determines susceptibility status, PEP decisions (MMR vs IVIG), and future vaccination scheduling; adults born ≥ 1957 should have documented vaccination or immunity evidence (McLean MMWR 2013 PMID 23760231; CDC ACIP)
  • exposure_history_and_outbreak_contextrequired
    history • used at CONTEXT
    Index case + exposure timing (within 72 h MMR PEP; within 6 d IVIG PEP; > 6 d surveillance only) + outbreak context (multiplies pre-test 10-50× for any febrile rash); secondary attack rate ~ 90% in unvaccinated susceptible household contacts (CDC ACIP; Moss Lancet 2017)
  • immunocompromise_statusrequired
    history • used at RISK_STRATIFICATION
    HIV (CD4 < 200), transplant (within 1 yr OR ongoing immunosuppression), chemo (cycle nadir), high-dose chronic steroid (≥ 20 mg prednisone-equivalent × ≥ 1 mo), autoimmune on biologic — all raise atypical-presentation risk (giant-cell pneumonia; persistent shedding) + high mortality; MMR contraindicated (live attenuated) so IVIG is PEP option (AAP Red Book 2024; AAP Red Book 2024)
  • pregnancy_status_and_gestational_agerequired
    history • used at CONTEXT
    Pregnancy + susceptible exposure → IVIG within 6 d (MMR contraindicated — live attenuated); maternal mortality elevated especially with measles pneumonia; teratogenicity controversial in measles (much less established than rubella); maternal-fetal medicine consult; postpartum MMR planning (ACOG; AAP Red Book 2024)
  • rash_distribution_and_three_cs_prodromerequired
    history • used at ENTRY
    Cephalocaudal pattern (hairline → face → trunk → extremities) + 3 C's prodrome + Koplik spots + outbreak context → near-pathognomonic clinical diagnosis (Moss Lancet 2017 PMID 28673424)
  • neurologic_features_adem_or_ssperequired
    symptom • used at RED_FLAGS
    Acute encephalopathy / seizures / focal deficits within 2 wk of rash = ADEM; subacute neurologic decline 7-10 yr post measles = SSPE; both life-threatening; empiric IV acyclovir for ADEM pending HSV PCR (AAP Red Book 2024; Tunkel IDSA encephalitis 2008; Bellini PNAS 2005)
  • oxygen_saturationrequired
    vital • used at RED_FLAGS
    SpO2 < 94% in measles + cough / dyspnea / new infiltrates → measles pneumonia (primary viral OR bacterial superinfection); empiric ceftriaxone + vancomycin per IDSA HAP/CAP guidance (AAP Red Book 2024; IDSA/ATS CAP 2019)
  • temperature_and_systemic_symptomsrequired
    vital • used at CONTEXT
    Fever ≥ 39 °C (often 40-40.5 °C) + systemic toxicity in measles prodrome / rash phase; persistent or new fever spike post-rash = bacterial superinfection suspicion (AAP Red Book 2024)
  • measles_igm_serologyrequired
    lab • used at INITIAL_WORKUP
    IgM serology ~ 95% sensitivity at 3-30 d post-rash; LR+ very high; may be falsely negative in first 3 d of rash + in vaccine-modified disease — RT-PCR preferred in those scenarios (CDC ACIP; AAP Red Book 2024)
  • measles_rt_pcr_throat_np_or_urinerequired
    lab • used at INITIAL_WORKUP
    RT-PCR (throat / NP / urine swab) — LR+ > 100; specificity ~ 100%; sensitive in first 7-10 d after rash; preferred in outbreak setting + vaccine-modified disease + immunocompromised + early-rash scenarios where IgM may be negative (CDC ACIP)
  • cbc_and_lymphopenia_check
    lab • used at INITIAL_WORKUP
    CBC typically shows leukopenia + lymphopenia in primary measles; leukocytosis suggests bacterial superinfection — drives empiric antibiotic threshold (AAP Red Book 2024)
  • procalcitonin_for_bacterial_superinfection
    lab • used at BRANCHING_WORKUP
    Procalcitonin > 0.25 ng/mL in measles + new fever spike / focal consolidation → bacterial superinfection — empiric ceftriaxone + vancomycin (IDSA/ATS CAP 2019)
  • creatinine_and_renal_functionrequired
    lab • used at TREATMENT
    Baseline + serial during IV acyclovir empiric (for ADEM differential pending HSV PCR) for crystalline nephropathy monitoring; dose-adjust if AKI; baseline for IVIG renal monitoring (PEP for high-risk susceptible) (FDA labels)
  • csf_studies_if_neuro
    lab • used at BRANCHING_WORKUP
    LP + CSF cell count + protein + glucose + measles PCR + HSV PCR + VZV PCR + bacterial culture + Gram stain if ADEM / encephalitis; ADEM = lymphocytic pleocytosis + mildly elevated protein + normal glucose; SSPE = CSF measles IgG elevated with elevated CSF:serum IgG index (Bellini PNAS 2005; Tunkel IDSA encephalitis 2008)
  • chest_xray_if_respiratory
    imaging • used at BRANCHING_WORKUP
    CXR if respiratory features — measles pneumonia (primary viral = diffuse interstitial infiltrates; bacterial superinfection = focal consolidation); guides empiric antibiotic decision (AAP Red Book 2024; IDSA/ATS CAP 2019)
  • mri_brain_if_neuro_features
    imaging • used at BRANCHING_WORKUP
    MRI for ADEM (white-matter lesions especially periventricular + subcortical) vs HSV encephalitis (temporal-lobe / limbic predilection — must distinguish, HSV is treatable medical emergency); SSPE (diffuse white-matter changes) (AAP Red Book 2024; Tunkel IDSA encephalitis 2008; Bellini PNAS 2005)
  • eeg_if_subacute_neurologic_decline
    imaging • used at BRANCHING_WORKUP
    EEG burst-suppression pattern in subacute neurologic decline 7-10 yr post measles supports SSPE diagnosis (Bellini JID 2005 PMID 16235165)

12-phase flow (12)

  1. 1FRAME
    Measles spectrum: primary measles (rubeola — 10-12 d incubation + 2-4 d prodrome + cephalocaudal rash + Koplik spots) + complications (pneumonia, otitis, croup, diarrhea, keratitis, ADEM) + SSPE (latent 7-10 yr, uniformly fatal) + atypical measles (immunocompromised) + immune amnesia (1-3 yr post-measles increased infection vulnerability) + post-exposure prophylaxis (MMR within 72 h immunocompetent ≥ 12 mo; IVIG within 6 d high-risk) + MMR vaccination eligibility (2-dose 12-15 mo + 4-6 yr routine; adult catch-up; 6-11 mo early-dose for travel + outbreak) (Moss Lancet 2017 PMID 28673424; Moss Lancet 2017 PMID 28673424)
    inputs: age, rash_onset_time_and_contagious_window
    actions: flag:public_health_emergency_every_measles_case_is_a_notifiable_disease (CDC; state law), flag:airborne_isolation_negative_pressure_room_N95_PPE (CDC)
    advance: Measles phenotype framed (primary / pneumonia / ADEM / SSPE / atypical / post-exposure / vaccination eligibility) and public-health-emergency posture activated
  2. 2ENTRY
    Recognise via clinical features: 3 C's prodrome (cough + coryza + conjunctivitis) + fever ≥ 39 °C; Koplik spots (pathognomonic; transient 12-72 h; check buccal mucosa opposite molars); cephalocaudal maculopapular rash; respiratory features (pneumonia); neuro features (ADEM, SSPE); high-risk exposure (PEP); maternal exposure; immunocompromised host; vaccination-eligible age threshold
    inputs: rash_distribution_and_three_cs_prodrome, neurologic_features_adem_or_sspe
    advance: Phenotype hypothesis (primary measles / pneumonia / ADEM / SSPE / atypical / post-exposure / vaccination-eligible) framed
  3. 3CONTEXT
    Age + vaccination history (MMR doses + serology if needed) + exposure history + outbreak context + immunocompromise status (HIV CD4, transplant, chemo nadir, chronic steroid, autoimmune biologic) + pregnancy gestational age; community / household / school / healthcare-setting exposure context; serology if vaccination decision needs immunity stratification
    inputs: vaccination_history_mmr_and_immunity, exposure_history_and_outbreak_context, pregnancy_status_and_gestational_age, immunocompromise_status
    advance: Host + exposure context captured
  4. 4RED_FLAGS
    Life-threatening features: severe pneumonia (SpO2 < 94% + new bilateral infiltrates; bacterial superinfection — MRSA, S. aureus, S. pneumoniae), ADEM / acute postinfectious encephalitis (altered mental status, seizures, focal deficits within 2 wk of rash; HSV encephalitis is the major treatable mimic — empiric IV acyclovir pending HSV PCR), SSPE features (subacute neurologic decline 7-10 yr post measles), dehydration with inability to maintain oral intake, infant < 12 mo with active disease, pregnant with active disease (especially pneumonia), immunocompromised with active disease (atypical measles + giant-cell pneumonia + persistent shedding). PUBLIC HEALTH EMERGENCY — STAT notification + airborne isolation + outbreak investigation are FIRST-LINE actions before treatment workup completes (CDC ACIP; AAP Red Book 2024; Tunkel IDSA encephalitis 2008)
    inputs: oxygen_saturation, neurologic_features_adem_or_sspe, temperature_and_systemic_symptoms
    actions: flag:STAT_public_health_notification_do_not_wait_for_lab_confirmation (CDC; state notifiable-disease law), flag:airborne_isolation_negative_pressure_room_N95_PPE (CDC), flag:contact_tracing_4d_before_rash_to_4d_after_rash (CDC), flag:empiric_iv_acyclovir_for_adem_pending_hsv_pcr (Tunkel IDSA encephalitis 2008), flag:empiric_ceftriaxone_plus_vancomycin_for_bacterial_superinfection (IDSA/ATS CAP 2019), flag:vitamin_a_universal_pediatric_regardless_of_nutritional_status (WHO; Imdad Cochrane 2010 PMID 21154399)
    advance: Red flags actioned; public health notified; airborne isolation in place; empiric therapy initiated as indicated
  5. 5INITIAL_WORKUP
    Clinical diagnosis is primary (3 C's + fever + Koplik + cephalocaudal rash + outbreak / exposure context). Laboratory confirmation = IgM serology + RT-PCR (throat / NP / urine swab) — both should be sent; PCR preferred for early-rash + vaccine-modified + immunocompromised scenarios where IgM may be falsely negative. CBC (leukopenia + lymphopenia typical; leukocytosis suggests bacterial superinfection), creatinine baseline. Procalcitonin if respiratory features. STAT public health notification + airborne isolation + outbreak investigation initiated in parallel with workup — do NOT wait for laboratory confirmation. Initiate Vitamin A on clinical recognition for all pediatric cases regardless of nutritional status (WHO universal; Imdad Cochrane 2010 PMID 21154399; D'Souza Cochrane 2002 PMID 21154399)
    inputs: measles_igm_serology, measles_rt_pcr_throat_np_or_urine, creatinine_and_renal_function
    actions: panel.cbc, panel.renal, panel.inflammation
    advance: Diagnosis confirmed clinically; serology + PCR sent; public health notified; airborne isolation in place; Vitamin A initiated for pediatric cases
  6. 6BRANCHING_WORKUP
    Site-directed: CXR if respiratory (primary viral = diffuse interstitial; bacterial superinfection = focal consolidation); LP + CSF studies (cell count, protein, glucose, measles PCR, HSV PCR, VZV PCR, bacterial culture, Gram stain, in SSPE add intrathecal antibody index) if ADEM / encephalitis / SSPE; MRI brain (ADEM = white-matter lesions especially periventricular + subcortical; SSPE = diffuse white-matter changes; HSV encephalitis = temporal-lobe / limbic predilection); EEG (SSPE = burst suppression; ADEM = focal slowing); slit-lamp if keratitis suspected (Vitamin A-responsive corneal ulceration); procalcitonin trend for bacterial superinfection differential
    inputs: chest_xray_if_respiratory, mri_brain_if_neuro_features, eeg_if_subacute_neurologic_decline, csf_studies_if_neuro, procalcitonin_for_bacterial_superinfection
    advance: Site-specific complications evaluated; sub-specialty consults engaged
  7. 7DIFFERENTIAL
    Primary measles vs rubella (separate togavirus; milder + lymphadenopathy + TORCH-teratogenic in pregnancy — distinguished by serology), scarlet fever (sandpaper rash + strawberry tongue + recent strep — distinguished by rapid strep), roseola (fever then rash AFTER defervescence; HHV-6/7), drug eruption (no Koplik, no prodrome, recent drug exposure), Kawasaki disease (5+ d fever + extremity changes + coronary aneurysm risk), dengue (retro-orbital + thrombocytopenia + geographic exposure), erythema infectiosum (parvovirus B19 — slapped cheek + lace pattern), enteroviral exanthem, mononucleosis (EBV) with ampicillin-induced rash. Measles ADEM vs HSV encephalitis (HSV temporal-lobe predilection + HSV PCR positive; empiric IV acyclovir for both pending PCR). SSPE vs other progressive neurodegenerative disorders in young (history of early-life primary measles + EEG burst suppression + CSF measles IgG with elevated CSF:serum IgG index). Atypical measles (vaccine-modified or immunocompromised) vs other viral exanthem (PCR + IgM serology; outbreak context) (Moss Lancet 2017; AAP Red Book 2024)
    advance: Look-alikes evaluated; PCR + IgM differentiate in atypical or vaccine-modified scenarios
  8. 8RISK_STRATIFICATION
    Stratify by phenotype + host: (1) primary measles immunocompetent child / adult = outpatient supportive + Vitamin A pediatric + airborne isolation home until 4 d after rash; (2) measles pneumonia = inpatient (or ICU if respiratory failure) + empiric ceftriaxone + vancomycin if bacterial superinfection features; (3) ADEM = ICU + empiric IV acyclovir pending HSV PCR + neurology + supportive; (4) SSPE = palliative + neurology + ID + family education (uniformly fatal; no curative therapy); (5) atypical measles immunocompromised = inpatient + ID + bacterial co-empirics + ribavirin off-label considered; (6) pregnant active disease = inpatient + maternal-fetal medicine + IV supportive + bacterial co-empirics if pneumonia; (7) infant < 12 mo active disease = inpatient + Vitamin A age-adjusted + supportive; (8) PEP MMR within 72 h susceptible immunocompetent ≥ 12 mo; (9) PEP IVIG within 6 d susceptible high-risk; (10) MMR vaccination 2-dose schedule (CDC ACIP; AAP Red Book 2024)
    inputs: immunocompromise_status, pregnancy_status_and_gestational_age
    advance: Severity tier + setting assigned
  9. 9TREATMENT
    Supportive care + Vitamin A pediatric (universal regardless of nutritional status; 200,000 IU PO day 1 + day 2 for ≥ 12 mo; 100,000 IU at 6-11 mo; 50,000 IU < 6 mo) + airborne isolation + STAT public health notification + outbreak investigation are the FIRST-LINE actions. NO FDA-approved antiviral for measles. Empiric ceftriaxone + vancomycin if bacterial superinfection features (focal consolidation, procalcitonin > 0.25, leukocytosis, clinical deterioration; cross-route to pulm.cap.core.v1). Empiric IV acyclovir 10 mg/kg q8h (adult) or 60 mg/kg/d divided q8h (neonate) for measles ADEM differential pending HSV PCR (do NOT delay; HSV encephalitis is the major treatable mimic per Tunkel IDSA encephalitis 2008). PEP: MMR 0.5 mL SC within 72 h for susceptible immunocompetent ≥ 12 mo (NOT pregnant, NOT severely immunocompromised); IVIG 0.5 g/kg IV (max 15 g) within 6 d for susceptible high-risk (immunocompromised, pregnant, infant < 12 mo). Ribavirin off-label per ID consult for severe atypical measles in immunocompromised (giant-cell pneumonia; data weak; case-series only; NOT routine). Steroids for ADEM controversial — high-dose IV methylprednisolone (30 mg/kg/d × 3-5 d) considered per neurology but evidence weak. SSPE: NO curative therapy (intraventricular interferon-α + isoprinosine + ribavirin combinations explored — at best slow progression); palliative care. Antipyretics — acetaminophen (AVOID aspirin per Reye syndrome risk like varicella). Catch-up vaccination of all previously-incomplete routine vaccinations in measles survivors (immune amnesia 1-3 yr post-measles per Mina Science 2019 PMID 31672891). RZV/MMR routine schedule per ACIP (separate from acute disease treatment).
    inputs: age, creatinine_and_renal_function
    advance: Supportive care + Vitamin A pediatric + bacterial co-empirics if indicated + empiric IV acyclovir if ADEM differential + PEP if exposed; STAT public health notified; airborne isolation in place; vaccination plan for catch-up + susceptibles ordered
  10. 10DISPOSITION
    Outpatient: uncomplicated immunocompetent measles in child / adult on supportive care + Vitamin A + airborne isolation at home until 4 d after rash onset; PEP for susceptible contacts; vaccination reconciliation; immune-amnesia post-measles surveillance for 1-3 yr. Inpatient: measles pneumonia (admitted, not ICU), infant < 12 mo with measles, pregnant with measles, immunocompromised with measles, ADEM observation 24-48 h. ICU: respiratory failure (PaO2/FiO2 ≤ 200 OR mechanical ventilation), ADEM with encephalopathy / seizures / focal deficits, multi-organ dysfunction. Transfer to specialty centre if SSPE or refractory ADEM (neurology + ID).
    inputs: oxygen_saturation
    advance: Setting + duration of care assigned
  11. 11MONITORING
    Outpatient: rash resolution 7-10 d (cephalocaudal pattern desquamates with hyperpigmentation); fever should resolve 48-72 h after rash onset; return precautions for new respiratory / neuro / dehydration features; isolation until 4 d after rash onset; immune-amnesia surveillance 1-3 yr (catch-up vaccination + close monitoring + lower threshold for empiric antibiotics in febrile illness). Inpatient / ICU: daily reassessment of respiratory + neuro status; serial creatinine + UOP for IV acyclovir + IVIG monitoring; procalcitonin trend if antibiotics started; CSF reassessment if ADEM not improving (consider HSV / VZV / bacterial differential). SSPE: palliative + family + neurology + ID; progression monitoring (EEG, MRI, functional assessment). Vaccination tracking: routine pediatric 2-dose schedule audit (12-15 mo + 4-6 yr); adult catch-up tracked to completion; early-dose MMR (6-11 mo) does not count toward standard 2-dose schedule which continues at 12-15 mo + 4-6 yr.
    inputs: creatinine_and_renal_function
    actions: panel.renal, panel.inflammation
    advance: Response confirmed; isolation expired (4 d after rash onset); vaccination catch-up + immune-amnesia surveillance plan in place
  12. 12FOLLOWUP
    Post-measles: immune-amnesia surveillance for 1-3 yr — catch-up vaccination of all previously-incomplete routine vaccinations + close monitoring + lower threshold for empiric antibiotics in febrile illness in measles survivors (Mina Science 2019 PMID 31672891); routine pediatric vaccinations re-administered if pre-measles immunity is impaired. Post-pneumonia: respiratory recovery + lung function; ID follow-up if immunocompromised. Post-ADEM: neurology + neuropsychology + rehabilitation; ~ 15% mortality + ~ 25% permanent neuro sequelae; serial imaging + functional assessment. Post-SSPE: palliative care + family education + neurology + ID; progression to vegetative state + death within 1-3 yr. Vaccination reconciliation: MMR 2-dose pediatric schedule audit; adult catch-up; early-dose MMR for travel + outbreak; high-risk catch-up (HCW, students, international travelers, outbreak contacts). Family education + contact tracing if institutional outbreak; public health reporting through resolution.
    advance: Follow-up + immune-amnesia surveillance + vaccination plan + family education delivered