Acute Osteomyelitis & Septic Arthritis
NEW Phase C dossier — authored 2026-05-15 for shard-5-obped-id. Covers acute bone & joint infection (BJI): acute osteomyelitis (hematogenous — paediatric metaphyseal AHO + adult vertebral osteomyelitis/discitis; contiguous — post-trauma/surgical/diabetic-foot/decubitus/dental; direct-inoculation — open fracture/plantar puncture; acute < 2 wk vs subacute/chronic with sequestrum/involucrum/sinus tract/Brodie abscess) + native septic arthritis (closed-space orthopaedic EMERGENCY — cartilage destruction within hours) + prosthetic-joint infection (biofilm-mediated). Pathogen axis drives empiric therapy: S. aureus incl MRSA (default — vancomycin until MSSA confirmed then narrow to cefazolin/nafcillin), Kingella kingae (child < 4 yr — β-lactam, intrinsically vancomycin/clindamycin-resistant), Group B Strep (neonate), gonococcal (sexually active — ceftriaxone), Salmonella (sickle-cell), Pseudomonas (IVDU/plantar-puncture — anti-pseudomonal), Streptococcus. Source control non-negotiable + time-critical (joint drainage / debridement / DAIR vs 1-/2-stage exchange). IV-to-oral early switch per OVIVA (Li NEJM 2019 PMID 30699315 — oral non-inferior, failure 13.2% vs 14.6%) + paediatric short-course RCTs (Peltola). Septic arthritis 2-4 wk; osteomyelitis 3-6 wk; native vertebral osteomyelitis ≥ 6 wk (Berbari IDSA 2015); PJI 6 wk IV-active backbone + prolonged oral suppression in retention. Manifest reused from prisma/seed/manifests/id.sepsis.core.v1.ts as nearest-ID precedent per shard-5 task spec + id.pertussis.v1 / id.measles.v1 / id.tetanus.v1 precedent — clears the audit broken_pointers check (the sibling manifest exists on disk). The dedicated manifest at prisma/seed/manifests/id.osteomyelitis-septic-arthritis.v1.ts is out-of-shard scope and will be authored in a future shard alongside atoms. Distinct from id.sepsis.core.v1 (SSC Hour-1 bundle sibling — this dossier cross-routes for BJI bacteraemia/septic shock with carryover; source control within 6-12 h independent mortality determinant), id.endocarditis.core.v1 (S. aureus bacteraemia + vertebral osteo bidirectional TEE workup), id.cellulitis.core.v1 (superficial SSTI vs deep BJI pivot — MRI marrow oedema/probe-to-bone/CRP trajectory), endo.diabetes-related-foot-disease.v1 / workup.diabetic_foot_ulcer (diabetic-foot contiguous osteomyelitis — this engine owns BJI antibiotic + bone source control; sibling owns ulcer staging + vascular + offloading), and id.crbsi.core.v1 (line-associated S. aureus seeding source). Sibling differentiation explicitly encoded for 5 siblings. Phenotype matrix (route × acuity × pathogen-host band × native/prosthetic — collapsed to 10 clinically distinct anchor combinations) encoded indirectly via regimen_axes.bji_empiric_targeted_and_source_control.steps (empiric_vancomycin_plus_third_or_fourth_gen_cephalosporin / mssa_narrow_cefazolin_or_nafcillin / mrsa_targeted_vancomycin_or_alternatives / gonococcal_septic_arthritis_ceftriaxone / host_pathogen_specific_salmonella_pseudomonas_streptococcus / pji_rifampin_combination_with_source_control / source_control_drainage_debridement_dair / adjunct_analgesia_and_supportive) + severity_triggers (10 phenotype-specific triggers) + setting playbooks (ed / icu / inpatient / outpatient). First-class TS phenotype field is schema-blocked. Severity triggers (10): native_septic_arthritis_emergency (severe — STAT arthrocentesis + empiric vancomycin + ceftriaxone/cefepime + urgent drainage; synovial WBC > 50,000 PMN-predominant LR+ 7.7 per Margaretten JAMA 2007 PMID 17405973), septic_hip_or_shoulder_surgical_drainage (severe — hip/shoulder/paediatric hip not reliably decompressed by aspiration → urgent arthrotomy/arthroscopic washout; Kocher predictors per Kocher 1999 PMID 10608376 + Caird 2006 PMID 16757758; ~ 30% concomitant osteomyelitis), neonatal_pseudoparalysis (life_threatening — septic arthritis/osteomyelitis until proven otherwise; multifocal; GBS + S. aureus + Gram-negative), bji_with_bacteremia_or_septic_shock (life_threatening — cross-route id.sepsis.core.v1; source control within 6-12 h per SSC 2026), vertebral_osteomyelitis_with_neuro_deficit_or_epidural_abscess (life_threatening — neurosurgical emergency; do NOT delay antibiotics for biopsy if neuro deficit/septic; ≥ 6 wk therapy per Berbari IDSA 2015), kingella_age_shift_under_4yr (moderate — leading paediatric pathogen 6-48 mo; β-lactam, vanc/clinda-resistant; blood-culture-bottle + PCR per IDSA/PIDS 2021), mrsa_risk_empiric_vancomycin (severe — vancomycin AUC-targeted then narrow to cefazolin/nafcillin once MSSA per IDSA + PMID 32191793), disseminated_gonococcal_infection (moderate — ceftriaxone + chlamydia co-treat + partner notification), sickle_cell_salmonella_or_pseudomonas_ivdu (severe — host-pathogen pearls; Salmonella sickle-cell; Pseudomonas IVDU/plantar-puncture), prosthetic_joint_infection_source_control (severe — DAIR vs 1-/2-stage exchange + rifampin combination for staph retained hardware, never monotherapy, per Osmon IDSA PJI 2013). Bayesian linkage (per §5.5.2): pre-test priors + LR table + decision thresholds + cross-dossier routing documented in _briefs/ and _research-bundles/id.osteomyelitis-septic-arthritis.v1.md. Key: septic arthritis prevalence in ED acute monoarthritis cohorts ~ 8-27% (Margaretten JAMA 2007 PMID 17405973); Kocher predicted septic-hip probability ~ <0.2% (0/4) → ~99% (4/4) (Kocher 1999 PMID 10608376); CRP > 20 mg/L strong paediatric predictor (Caird 2006 PMID 16757758). Key LRs: synovial WBC > 50,000 LR+ 7.7, > 100,000 LR+ 28, PMN ≥ 90% LR+ 3.4, < 25,000 LR− 0.32 (does NOT exclude in immunosuppressed/gonococcal/prosthetic/partially-treated); MRI marrow oedema sensitivity ~ 90-100% (LR+ ~ 4-9); probe-to-bone diabetic-foot LR+ ~ 6-7; blood cultures positive ~ 30-50% of haematogenous BJI. Conditional dependencies: synovial-WBC LR | host-immune-state; pathogen prior | age + host; biopsy yield | prior antibiotic exposure (hold antibiotics for stable vertebral-osteo biopsy per Berbari IDSA 2015); CRP trajectory | source-control adequacy. Decision thresholds: T_aspirate, T_empiric_now (treatment benefit > test-delay cost in suspected septic arthritis), T_surgical_drainage, T_hold_abx_for_biopsy, T_oral_switch (OVIVA), T_route_sepsis, T_route_endocarditis. Cross-dossier routing: id.sepsis.core.v1 (BJI bacteraemia/shock), id.endocarditis.core.v1 (S. aureus + vertebral osteo bidirectional), id.cellulitis.core.v1 (superficial vs deep pivot), endo.diabetes-related-foot-disease.v1 / workup.diabetic_foot_ulcer (diabetic-foot contiguous osteo), id.crbsi.core.v1 (line seeding source). ROS/DDx LR seed data NOT touched (cross-cutting; out of shard scope). Settings (4): ED (recognise monoarthritis + fever / refusal to bear weight / pseudoparalysis / focal bone pain / back pain + neuro deficit → STAT arthrocentesis → empiric vancomycin + ceftriaxone/cefepime after cultures → orthopaedics for drainage → sepsis screen + cross-route), ICU (BJI with septic shock / bacteraemia / multi-organ dysfunction — SSC bundle + urgent source control + cross-route id.sepsis.core.v1), Inpatient (source control completion + organism-directed IV backbone + CRP/ESR trajectory + IV-to-oral early switch per OVIVA + PJI surgical strategy), Outpatient (oral continuation per OVIVA/Peltola or OPAT + CRP/ESR surveillance + ortho/ID follow-up + rehabilitation + relapse/chronic-osteomyelitis return precautions + seeding-source resolution). Prehospital implicit via flow.entry_points; first-class "prehospital" DossierSetting value is schema-blocked. Drug guidance grounded in IDSA Native Vertebral Osteomyelitis Guideline (Berbari CID 2015) + IDSA Septic Arthritis standards + ACR acute monoarthritis approach + IDSA/PIDS Pediatric Acute Hematogenous Osteomyelitis CPG 2021 (Woods et al.) + IDSA Prosthetic Joint Infection Guideline (Osmon CID 2013) + ESCMID/EBJIS 2024 + OVIVA (Li NEJM 2019 PMID 30699315) + Peltola pediatric short-course RCTs + Margaretten JAMA 2007 PMID 17405973 + Kocher 1999 PMID 10608376 + Caird 2006 PMID 16757758 + Rybak ASHP/IDSA 2020 vancomycin consensus PMID 32191793 + Yagupsky Kingella review + Zimmerli PJI review. RxCUIs referenced: vancomycin (11124), ceftriaxone (2193), cefepime (20481), cefazolin (2180), nafcillin (7233), ciprofloxacin (2551), rifampin (9384), linezolid (190376), daptomycin (22299), azithromycin (18631), acetaminophen (161) — RxCUIs reused from validated sibling dossiers (id.sepsis.core.v1, id.crbsi.core.v1, id.endocarditis.core.v1, id.bacterial-meningitis.core.v1); full validation via npm run research:rxnav deferred to next research loop (out-of-shard gate dependency). Open gaps: (1) Phenotype matrix not first-class TS field — schema-blocked. (2) Bayesian LR seed data not encoded — narrative + brief/research-bundle only this pass; ROS/DDx seed edit cross-cutting. (3) Prehospital not a DossierSetting value — schema-blocked. (4) Kocher criteria + CRP/ESR-trend rendered inline (flow + severity_triggers + setting playbooks) — no standardised calc.kocher in clinical-tools-registry.ts; calculators array left empty (mirrors id.pertussis.v1 inline-scoring pattern). workup.septic_arthritis IS canonical and is wired. (5) Manifest file at prisma/seed/manifests/id.osteomyelitis-septic-arthritis.v1.ts not authored — reused nearest-ID precedent (id.sepsis.core.v1.ts) per task spec + sibling precedent. (6) Co-located test file not authored — coverage via canonical tests/dossiers/dossier-contract.test.ts (resolves on disk). (7) _registry.ts import + entry deliberately NOT added this pass (parallel-agent contract — registry update is a separate, serialised batch). (8) 2026-05-22 citation remediation complete — all 10 PMIDs PubMed-live-verified: OVIVA 30699315, Margaretten 17405973, Kocher 10608376, Caird 16757758, Rybak 32191793, Berbari 26229122, Osmon 23223583, Woods 34350458, Yagupsky 21321033, Peltola 20842069; 6 mis-attributed predecessors (17456824, 10199784, 16882907, 34195811, 15494908, 15479938) replaced. daptomycin RxCUI 253014 (=etanercept) corrected to 22299; remaining RxCUIs RxNav-verified. (9) Cross-engine reconciliation pending: endo.diabetes-related-foot-disease.v1 boundary for contiguous diabetic-foot osteomyelitis — this engine owns BJI antibiotic + bone source control; reconcile in future pass. Status declared INTEGRATED — manifest field points at existing sibling manifest (id.sepsis.core.v1.ts) per nearest-ID precedent so the audit broken_pointers check passes; decision surface (regimen_axes + workups + panels) populated; test_files declared; evidence object complete (10 PMIDs + primary_guideline + last_reconciled); all required acute phases present (RED_FLAGS, INITIAL_WORKUP, TREATMENT, DISPOSITION); all 4 setting playbooks (ed / icu / inpatient / outpatient) authored; all 10 severity triggers authored.
Entry points (10)
- symptomAcute monoarthritis (warm, swollen, painful joint, restricted ROM) + fever — septic arthritis until proven otherwise; STAT arthrocentesis (Margaretten JAMA 2007 PMID 17405973; IDSA septic arthritis)acute_monoarthritis_with_fever
- symptomRefusal to bear weight / limp / atraumatic hip pain in a child — apply Kocher predictors (fever > 38.5 °C, non-weight-bearing, ESR > 40, WBC > 12,000) ± CRP > 20 mg/L to distinguish septic hip vs transient synovitis (Kocher 1999 PMID 10608376; Caird 2006 PMID 16757758)refusal_to_bear_weight_or_limp_peds
- symptomPseudoparalysis / reluctance to move a limb in a neonate / young infant — septic arthritis or osteomyelitis until proven otherwise; often multifocal; GBS + S. aureus + Gram-negative; STAT imaging + aspiration (IDSA/PIDS 2021)pseudoparalysis_in_neonate
- symptomFocal bone pain / point tenderness + fever ± overlying erythema — acute osteomyelitis (hematogenous in children long-bone metaphysis; vertebral / discitis in adults); MRI for marrow oedema (IDSA/PIDS 2021; Berbari IDSA 2015)focal_bone_pain_with_fever
- symptomSubacute back pain + fever ± neurologic deficit ± elevated ESR/CRP — vertebral osteomyelitis / discitis ± epidural abscess; MRI + image-guided biopsy before antibiotics if stable (Berbari IDSA 2015)back_pain_with_fever_or_neuro_deficit
- lab_abnormalitySynovial fluid WBC > 50,000 /µL with PMN predominance — suggestive of septic arthritis (LR+ 7.7; > 100,000 LR+ 28; Margaretten JAMA 2007 PMID 17405973)synovial_wbc_over_50k_pmn_predominant
- lab_abnormalityElevated CRP / ESR with a musculoskeletal focus — supports osteoarticular infection; CRP is the monitoring workhorse (falls faster than ESR; Caird 2006 PMID 16757758; IDSA/PIDS 2021)elevated_crp_esr_with_msk_focus
- imagingMRI marrow oedema / periosteal or paravertebral / epidural abscess — osteomyelitis (sensitivity ~ 90-100 %; Berbari IDSA 2015)mri_marrow_edema_or_periosteal_abscess
- historyPainful arthroplasty, wound drainage, or sinus tract communicating with the prosthesis — prosthetic-joint infection; deep operative cultures; source-control strategy (Osmon IDSA PJI 2013)prosthetic_joint_with_pain_or_sinus_tract
- symptomSepsis / septic-shock criteria with a bone/joint focus or positive blood cultures — cross-route id.sepsis.core.v1 (Hour-1 bundle); source control within 6-12 h (SSC 2026)sepsis_criteria_with_bji_focus
Required inputs (17)
- agerequireddemographic • used at CONTEXTAge stratifies pathogen prior + empiric regimen (Kingella kingae leading in 6-48 mo — β-lactam, intrinsically vancomycin/clindamycin-resistant; GBS + S. aureus + Gram-negative in neonate; gonococcal in sexually active adolescent/adult), Kocher applicability (paediatric hip), and short-course IV-to-oral candidacy (Peltola / IDSA-PIDS 2021)
- monoarthritis_featuresrequiredsymptom • used at ENTRYWarm, swollen, painful joint with restricted active + passive ROM and effusion → arthrocentesis indication; polyarticular pattern (~ 15-20 %) carries worse prognosis and suggests immunosuppression / RA / disseminated gonococcal (Margaretten JAMA 2007 PMID 17405973)
- weight_bearing_statusrequiredsymptom • used at ENTRYNon-weight-bearing / refusal to bear weight is a Kocher predictor of paediatric septic hip and a red flag in any age; pseudoparalysis in a neonate = septic arthritis/osteomyelitis until proven otherwise (Kocher 1999 PMID 10608376; IDSA/PIDS 2021)
- temperaturerequiredvital • used at CONTEXTFever > 38.5 °C is a Kocher predictor and a sepsis-screen component; absence of fever does NOT exclude septic arthritis (immunosuppressed / gonococcal / partially treated)
- host_risk_factorsrequiredhistory • used at CONTEXTRA, prosthetic joint, recent intra-articular injection/surgery, immunosuppression, diabetes, IVDU, sickle-cell disease, advanced age, prior BJI — raise pre-test probability and shift the pathogen prior (sickle-cell → Salmonella; IVDU/plantar-puncture → Pseudomonas; prosthetic → CoNS/biofilm) (Margaretten JAMA 2007 PMID 17405973)
- sexual_history_for_gonococcalhistory • used at CONTEXTSexually active adolescent/adult with migratory polyarthralgia + tenosynovitis + pustular dermatitis OR purulent monoarthritis → disseminated gonococcal infection; ceftriaxone + chlamydia co-treatment + partner notification (CDC STI; IDSA)
- prosthetic_or_hardware_statusrequiredhistory • used at CONTEXTProsthetic joint or internal fixation present → PJI / implant-associated infection pathway; biofilm-mediated; source-control strategy (DAIR vs 1-/2-stage exchange) + rifampin combination for retained staph hardware (Osmon IDSA PJI 2013)
- symptom_duration_and_routerequiredhistory • used at FRAMESymptom duration (< 2 wk acute vs subacute/chronic with sequestrum) + route (hematogenous vs contiguous vs direct-inoculation) determines source-control aggressiveness, biopsy strategy, and IV-to-oral candidacy (OVIVA Li NEJM 2019 PMID 30699315; Berbari IDSA 2015)
- neuro_deficit_or_spinal_red_flagsrequiredsymptom • used at RED_FLAGSNew motor/sensory deficit, saddle anaesthesia, bladder/bowel dysfunction with back pain + fever → vertebral osteomyelitis with epidural abscess / cord compression — neurosurgical emergency; do NOT delay antibiotics for biopsy when neuro deficit / sepsis (Berbari IDSA 2015)
- synovial_fluid_analysisrequiredlab • used at INITIAL_WORKUPSynovial WBC + differential (> 50,000 /µL PMN-predominant LR+ 7.7; > 100,000 LR+ 28; < 25,000 LR− 0.32 — does NOT exclude in immunosuppressed/gonococcal/prosthetic), Gram stain, culture, crystal microscopy (crystals do not exclude co-existent sepsis) (Margaretten JAMA 2007 PMID 17405973)
- blood_culturesrequiredlab • used at INITIAL_WORKUPBlood cultures positive in ~ 30-50 % of haematogenous osteomyelitis / septic arthritis — when positive often define the organism and may obviate biopsy; S. aureus bacteraemia → screen for endocarditis (TEE) (Berbari IDSA 2015)
- crp_esr_baseline_and_trendrequiredlab • used at INITIAL_WORKUPCRP + ESR for diagnosis and the monitoring workhorse; CRP > 20 mg/L is a strong paediatric septic-hip predictor (Caird 2006 PMID 16757758); failure of CRP to fall by ~ day 3-5 despite adequate drainage signals retained focus / wrong organism / resistance (IDSA/PIDS 2021)
- cbc_with_differentialrequiredlab • used at INITIAL_WORKUPWBC > 12,000 /µL is a Kocher predictor; baseline for trend; leukocytosis with left shift supports infection (Kocher 1999 PMID 10608376)
- bone_or_operative_culturelab • used at BRANCHING_WORKUPImage-guided or open bone biopsy / deep operative cultures (≥ 3-5 samples) — sinus-tract swabs are unreliable; vertebral-osteo biopsy yield falls after empiric antibiotics → hold antibiotics for biopsy if stable (Berbari IDSA 2015; ESCMID/EBJIS 2024)
- kingella_pcr_or_blood_culture_bottle_inoculationlab • used at BRANCHING_WORKUPIn children < 4 yr (6-48 mo) inoculate synovial fluid / bone aspirate into blood-culture bottles + Kingella / 16S PCR — Kingella kingae is fastidious and culture-negative on standard plates; intrinsically resistant to vancomycin + clindamycin (IDSA/PIDS 2021; Yagupsky review)
- mri_target_regionimaging • used at BRANCHING_WORKUPMRI is the imaging modality of choice for osteomyelitis (marrow oedema, abscess, sequestrum) and vertebral osteomyelitis (disc/endplate destruction, paravertebral/epidural abscess); sensitivity ~ 90-100 % (Berbari IDSA 2015; IDSA/PIDS 2021)
- creatinine_and_renal_functionrequiredlab • used at TREATMENTBaseline + serial for vancomycin AUC-targeted dosing + nephrotoxicity monitoring, aminoglycoside avoidance, and antibiotic renal dose adjustment (IDSA 2020 vancomycin consensus PMID 32191793; FDA labels)
12-phase flow (12)
- 1FRAMEBone & joint infection spectrum: acute osteomyelitis (hematogenous — peds metaphyseal AHO + adult vertebral osteomyelitis/discitis; contiguous — post-trauma/surgical/diabetic-foot/decubitus/dental; direct-inoculation — open fracture/plantar puncture) + native septic arthritis (closed-space orthopaedic EMERGENCY — cartilage destruction within hours) + prosthetic-joint infection (biofilm-mediated) × acute (< 2 wk, no sequestrum) vs subacute/chronic (sequestrum, involucrum, sinus tract, Brodie abscess) × pathogen-host band (S. aureus incl MRSA default; Kingella < 4 yr; GBS neonate; gonococcal sexually active; Salmonella sickle-cell; Pseudomonas IVDU/plantar-puncture; Streptococcus) (Berbari IDSA 2015; IDSA/PIDS 2021; Osmon IDSA PJI 2013)inputs: age, symptom_duration_and_routeadvance: BJI phenotype framed (syndrome × route × acuity × pathogen-host band × native/prosthetic)
- 2ENTRYRecognise via: acute monoarthritis + fever; refusal to bear weight / limp / atraumatic hip pain in a child (apply Kocher); pseudoparalysis in a neonate; focal bone pain + fever; subacute back pain + fever ± neuro deficit; synovial WBC > 50,000 PMN-predominant; elevated CRP/ESR with MSK focus; MRI marrow oedema; painful arthroplasty / sinus tract; sepsis criteria with bone/joint focusinputs: monoarthritis_features, weight_bearing_statusactions: workup.septic_arthritisadvance: BJI hypothesis (osteomyelitis / native septic arthritis / PJI) framed
- 3CONTEXTAge + host risk factors (RA, prosthetic joint, recent intra-articular procedure, immunosuppression, diabetes, IVDU, sickle-cell, advanced age) + sexual history (gonococcal) + prosthetic/hardware status + temperature + symptom duration/route — these set the pathogen prior and the empiric regimeninputs: age, temperature, host_risk_factors, sexual_history_for_gonococcal, prosthetic_or_hardware_statusadvance: Host + pathogen-prior context captured
- 4RED_FLAGSTime-critical features: native septic arthritis (cartilage destruction within hours — STAT arthrocentesis + urgent drainage; hip/shoulder/paediatric hip → surgical); neonatal pseudoparalysis; vertebral osteomyelitis with neuro deficit / epidural abscess / cord compression (neurosurgical emergency — do NOT delay antibiotics for biopsy); sepsis / septic shock with bone-joint focus → SSC Hour-1 bundle + cross-route id.sepsis.core.v1; source control within 6-12 h if bacteraemic (SSC 2026; IDSA/PIDS 2021; Berbari IDSA 2015)inputs: neuro_deficit_or_spinal_red_flags, weight_bearing_statusactions: workup.septic_arthritis, panel.cbc, panel.inflammationadvance: Red flags actioned; arthrocentesis / urgent imaging done; empiric therapy + source-control plan initiated; sepsis routed if criteria met
- 5INITIAL_WORKUPSTAT arthrocentesis before antibiotics where feasible — synovial WBC + differential (> 50,000 /µL PMN-predominant suggestive; LR+ 7.7), Gram stain, culture, crystal microscopy (crystals do NOT exclude co-existent sepsis); two sets of blood cultures (positive in ~ 30-50 %); CRP + ESR baseline (CRP is the monitoring workhorse; CRP > 20 mg/L strong paediatric predictor); CBC with differential (WBC > 12,000 Kocher predictor); creatinine baseline for vancomycin AUC dosing. Empiric antibiotics immediately AFTER cultures in suspected septic arthritis / sepsis / Kocher-positive septic hip (treatment benefit > test-delay cost) (Margaretten JAMA 2007 PMID 17405973; Kocher 1999 PMID 10608376; IDSA/PIDS 2021)inputs: synovial_fluid_analysis, blood_cultures, crp_esr_baseline_and_trend, cbc_with_differential, creatinine_and_renal_functionactions: workup.septic_arthritis, panel.cbc, panel.renal, panel.inflammationadvance: Synovial fluid + blood cultures obtained; CRP/ESR/CBC/creatinine baseline established; empiric antibiotics started per phenotype
- 6BRANCHING_WORKUPPhenotype-directed: MRI of target region (marrow oedema, abscess, sequestrum; vertebral — disc/endplate destruction + paravertebral/epidural abscess); image-guided or open bone biopsy / deep operative cultures (≥ 3-5 samples; sinus-tract swabs unreliable) — for stable vertebral osteomyelitis HOLD antibiotics until biopsy (Berbari IDSA 2015); in child < 4 yr inoculate synovial/bone aspirate into blood-culture bottles + Kingella / 16S PCR (IDSA/PIDS 2021; Yagupsky); TEE if S. aureus bacteraemia with vertebral osteo (cross-route id.endocarditis.core.v1); probe-to-bone + IDSA DFI grading if diabetic foot (cross-reference workup.diabetic_foot_ulcer)inputs: mri_target_region, bone_or_operative_culture, kingella_pcr_or_blood_culture_bottle_inoculationactions: workup.diabetic_foot_ulcer, workup.crbsiadvance: Imaging + microbiologic source obtained; organism identified or empirically covered; surgical strategy defined
- 7DIFFERENTIALSeptic arthritis vs crystal arthropathy (gout/CPPD — crystal microscopy pivot; crystals + infection can co-exist) vs reactive/post-infectious arthritis (sterile culture + antecedent GI/GU infection + HLA-B27) vs rheumatoid/inflammatory flare; septic hip vs transient synovitis in children (Kocher predictor count + CRP > 20 mg/L pivot — transient synovitis afebrile, weight-bearing-tolerant, low markers, self-limited); osteomyelitis vs bone infarction in sickle-cell (MRI + aspiration pivot) vs Charcot neuroarthropathy in diabetic foot (probe-to-bone + biopsy pivot); vertebral osteomyelitis vs metastatic disease / compression fracture (disc-space + endplate destruction + paravertebral abscess favour infection); PJI vs aseptic loosening (ESR/CRP, synovial PJI thresholds, alpha-defensin, ≥ 2 deep cultures, sinus tract); S. aureus vertebral osteo ↔ infective endocarditis (persistent bacteraemia + new murmur + TEE — bidirectional) (Margaretten JAMA 2007 PMID 17405973; Berbari IDSA 2015)advance: Non-infectious + alternative-infectious look-alikes evaluated; synovial/bone/blood cultures + MRI discriminate
- 8RISK_STRATIFICATIONStratify by syndrome + host + pathogen: (1) native septic arthritis any pathogen = orthopaedic emergency, urgent drainage + empiric vancomycin + ceftriaxone/cefepime; (2) paediatric septic hip Kocher-positive = US-guided aspiration + urgent arthrotomy/arthroscopic washout (hip not reliably decompressed by aspiration); (3) child < 4 yr Kingella = β-lactam (cefazolin/ceftriaxone — vanc/clinda-resistant); (4) neonate pseudoparalysis = broad empiric (anti-staph + GBS + Gram-negative) + multifocal survey; (5) adult vertebral osteo = MRI + biopsy-before-antibiotics if stable, ≥ 6 wk therapy, endocarditis screen if S. aureus bacteraemia; (6) disseminated gonococcal = ceftriaxone + chlamydia co-treat; (7) sickle-cell = cover Salmonella + S. aureus; (8) IVDU/plantar-puncture = add anti-pseudomonal; (9) PJI = source-control strategy (DAIR vs 1-/2-stage exchange) + rifampin combination for staph; (10) BJI + bacteraemia/shock = cross-route id.sepsis.core.v1 with carryover (Margaretten JAMA 2007 PMID 17405973; IDSA/PIDS 2021; Osmon IDSA PJI 2013)inputs: age, host_risk_factors, prosthetic_or_hardware_statusadvance: Severity tier + empiric regimen + source-control strategy + setting assigned
- 9TREATMENTEmpiric: vancomycin (MRSA cover, AUC-targeted) + ceftriaxone (Gram-negative + gonococcal + Salmonella) OR cefepime (Pseudomonas risk: IVDU / plantar puncture); in child < 4 yr retain a β-lactam (cefazolin/ceftriaxone — Kingella vanc/clinda-resistant); neonate broaden (anti-staph + GBS + Gram-negative); disseminated gonococcal → ceftriaxone (+ chlamydia co-treat). Narrow on culture: MSSA → cefazolin or nafcillin (β-lactam superior to vancomycin for MSSA); MRSA → vancomycin or daptomycin/linezolid; Streptococcus → penicillin/ceftriaxone. Source control: native septic arthritis → STAT joint drainage (serial aspiration vs arthroscopic vs open; hip/shoulder/paediatric hip → surgical); osteomyelitis → debridement of devitalised bone/sequestrum/abscess; PJI → DAIR (well-fixed + < 3 wk symptoms + susceptible + exchangeable liner) vs 1-/2-stage exchange + RIFAMPIN combination (always with a companion to prevent rifampin resistance — never monotherapy) for staph with retained hardware. Duration / route: IV-to-oral early switch once source controlled + susceptible + reliable absorption (OVIVA Li NEJM 2019 PMID 30699315 — oral non-inferior, failure 13.2 % vs 14.6 %; paediatric short-course per Peltola / IDSA-PIDS 2021); septic arthritis 2-4 wk, osteomyelitis 3-6 wk, native vertebral osteomyelitis ≥ 6 wk (Berbari IDSA 2015), PJI 6 wk IV-active backbone + prolonged oral suppression in retention. Adjunct: analgesia, immobilisation/early ROM per ortho, sepsis bundle if bacteraemic.inputs: age, creatinine_and_renal_function, prosthetic_or_hardware_statusadvance: Empiric antibiotics started + source control booked/done; narrowing plan on culture defined; IV-to-oral + duration plan set
- 10DISPOSITIONED: arthrocentesis + empiric antibiotics + orthopaedic consult for drainage + admit. ICU: BJI with septic shock / bacteraemia / multi-organ dysfunction (cross-route id.sepsis.core.v1). Inpatient: source control completed, organism-directed IV backbone, CRP/ESR trajectory monitoring, IV-to-oral early-switch decision (OVIVA), PJI surgical-strategy execution. Outpatient / OPAT: oral continuation per OVIVA / Peltola once stable + source controlled + susceptible + responding; OPAT if IV agent required for duration.inputs: weight_bearing_statusadvance: Setting + source-control status + antibiotic route/duration assigned
- 11MONITORINGCRP/ESR trajectory (CRP is the workhorse — failure to fall by ~ 50 % by day 3-5 despite adequate drainage → retained focus / wrong organism / resistance → repeat imaging + surgical re-look); clinical exam (joint ROM, pain, weight-bearing, wound/sinus); blood cultures clearance if bacteraemic; vancomycin AUC + creatinine (nephrotoxicity); rifampin LFTs + drug-interaction review (potent CYP3A4 inducer); linezolid CBC if > 14 d (myelosuppression) + serotonin-syndrome screen; daptomycin CPK weekly; fluoroquinolone tendinopathy/QT counsel; paediatric — CRP-guided IV-to-oral switch + total-duration decision (IDSA/PIDS 2021)inputs: crp_esr_baseline_and_trend, creatinine_and_renal_functionactions: panel.inflammation, panel.renal, panel.cbcadvance: Inflammatory markers trending down; source control confirmed adequate; antibiotics narrowed by culture; oral switch executed if criteria met
- 12FOLLOWUPOrthopaedic + ID follow-up; CRP/ESR surveillance until normalised; functional rehabilitation (joint ROM, weight-bearing progression); relapse / chronic-osteomyelitis return precautions (recurrent pain, swelling, sinus drainage, fever); vertebral osteo — follow-up MRI only if clinical failure (not routine; Berbari IDSA 2015); PJI — chronic oral suppression audit in retention strategies + arthroplasty-team follow-up; address seeding source (endocarditis if S. aureus bacteraemia; line if CRBSI; diabetic-foot offloading + glycaemic control)advance: Follow-up + rehabilitation + relapse-precaution plan delivered; seeding source addressed