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neonatal.early-onset-sepsis.v1

Neonatal Early-Onset Sepsis (EOS)

pediatricsacuteneonatalpediatricacuteinpatient

First file in the neonatal.* prefix (lane-D 2026-05-26). All 4 PMIDs PubMed-MCP-verified; all 3 RxCUIs (ampicillin 733, gentamicin 1596450, acyclovir 281) RxNav forward + reverse verified 2026-05-26. Manifest pointer resolves to a co-authored minimal scaffold manifest in prisma/seed/manifests/. Lane-D extras applied: per-kg dosing with GA / PMA bands, max_dose populated, rationale ends with citation, ceftriaxone-avoid-<28-d safety rule enforced. Open gaps: calc.kaiser_eos_calculator not yet in clinical-tools-registry (rendered narratively); no neonatal-specific protocol id (uses generic protocol.septic_shock).

Entry points (6)

  • symptom
    Neonate ≤72 h of life with tachypnea, grunting, retractions, or apnea — sepsis must be considered (Puopolo 2018 PMID 30455342)
    neonate_respiratory_distress_or_tachypnea_eos
  • symptom
    Neonate with temperature instability (hypothermia more common than fever in EOS) (Puopolo 2018 PMID 30455342)
    neonate_temperature_instability_eos
  • symptom
    Lethargy, poor feeding, hypotonia — non-specific but high-yield EOS triggers (Puopolo 2018 PMID 30455342)
    neonate_lethargy_poor_feeding_eos
  • history
    Maternal intrapartum fever or chorioamnionitis — strong EOS risk factor (Puopolo 2018; Kuzniewicz 2017 PMID 28241253)
    maternal_chorioamnionitis_or_intrapartum_fever
  • history
    Maternal GBS-positive OR unknown with inadequate intrapartum antibiotic prophylaxis (Verani CDC 2010 PMID 21088663)
    maternal_gbs_positive_or_unknown_with_inadequate_iap
  • history
    Preterm delivery OR prolonged ROM > 18 h — Puopolo 2018 risk factors (PMID 30455344 preterm; 30455342 term)
    preterm_or_prom_gt_18h

Required inputs (20)

  • gestational_age_weeksrequired
    demographic • used at FRAME
    Term ≥35 0/7 wk (Puopolo 30455342) vs preterm ≤34 6/7 wk (Puopolo 30455344) drive separate risk frameworks and drug-interval bands
  • birthweight_gramsrequired
    demographic • used at FRAME
    Per-kg dosing for every antibiotic; VLBW < 1500 g cohort has higher EOS incidence and longer empiric-duration thresholds
  • postnatal_age_hoursrequired
    demographic • used at FRAME
    EOS by definition is < 72 h; postnatal age also drives dosing-interval bands (week-1 vs > week 1 ampicillin q12h vs q8h)
  • temperature_neonaterequired
    vital • used at RED_FLAGS
    Hypothermia ≥ fever as EOS marker in neonate; temperature instability is a Puopolo 2018 clinical-status driver
  • hr_neonaterequired
    vital • used at CONTEXT
    Tachycardia or bradycardia — both seen in neonatal sepsis; bradycardia + apnea is high-acuity
  • rr_neonaterequired
    vital • used at CONTEXT
    Tachypnea / grunting / apnea — respiratory pattern drives ventilation decisions
  • spo2_pre_and_post_ductalrequired
    vital • used at CONTEXT
    Pre-/post-ductal SpO₂ gradient suggests PPHN coinfection; differential includes CHD
  • sbp_neonaterequired
    vital • used at RED_FLAGS
    Hypotension by gestational-age threshold drives vasoactive escalation
  • maternal_gbs_status_and_iap_adequacyrequired
    history • used at CONTEXT
    GBS-positive with inadequate IAP is a Kaiser EOS calculator high-weight factor (Verani CDC 2010 PMID 21088663)
  • maternal_intrapartum_fever_or_chorioamnionitisrequired
    history • used at CONTEXT
    Maternal fever ≥ 38°C OR clinical chorioamnionitis is the dominant Puopolo risk driver
  • duration_of_rom_hoursrequired
    history • used at CONTEXT
    ROM > 18 h is a classic risk factor; included in Kaiser EOS calculator weighting
  • maternal_herpes_lesions_or_historyrequired
    history • used at RED_FLAGS
    Active maternal genital HSV at delivery triggers acyclovir empirical coverage
  • cbc_with_diff_neonaterequired
    lab • used at INITIAL_WORKUP
    WBC < 5K or > 25K, neutropenia, immature-to-total neutrophil ratio > 0.2 support EOS — Puopolo 2018
  • blood_culture_pre_antibioticrequired
    lab • used at INITIAL_WORKUP
    Minimum 1 mL per bottle; positive at 36-48 h is the LR+ > 100 anchor for EOS diagnosis (Schelonka)
  • crp_serialrequired
    lab • used at INITIAL_WORKUP
    CRP at 24 + 48 h pair has higher NPV than a single early value; rising CRP supports continuation of antibiotics
  • glucose_neonaterequired
    lab • used at INITIAL_WORKUP
    Hypoglycemia is a common sepsis comorbid; concurrent hyperglycemia suggests stress / steroids
  • lactate_neonate
    lab • used at INITIAL_WORKUP
    Lactate > 4 mmol/L suggests perfusion failure; serial trend tracks resuscitation response
  • csf_studies_if_LP
    lab • used at BRANCHING_WORKUP
    LP if culture-positive sepsis, CNS features, or persistent positive blood cultures — informs duration + meningitic dosing (Puopolo 2018)
  • cxr_neonaterequired
    imaging • used at INITIAL_WORKUP
    Pneumonia infiltrate vs RDS pattern vs effusion — guides ventilation + differential
  • cns_signs_seizure_bulging_fontanellerequired
    symptom • used at RED_FLAGS
    Seizures + bulging fontanelle + meningismus → LP + meningitic-dose antibiotics (Puopolo 2018)

12-phase flow (12)

  1. 1FRAME
    Frame by gestational age cohort (≥35 0/7 wk term per Puopolo 30455342 vs ≤34 6/7 wk preterm per Puopolo 30455344), postnatal age in hours (EOS < 72 h), and birth weight (per-kg dosing).
    inputs: gestational_age_weeks, birthweight_grams, postnatal_age_hours
    advance: Cohort + age + weight captured; framework selected
  2. 2ENTRY
    Identify trigger: clinical signs (respiratory distress, temperature instability, lethargy, poor feeding) OR maternal risk factors (chorioamnionitis, GBS-positive with inadequate IAP, preterm, PROM > 18 h) OR positive screening per Kaiser EOS calculator (Kuzniewicz 2017 PMID 28241253).
    inputs: maternal_gbs_status_and_iap_adequacy, maternal_intrapartum_fever_or_chorioamnionitis, duration_of_rom_hours
    advance: EOS suspicion documented and classified (clinical sepsis vs risk-only)
  3. 3CONTEXT
    Maternal GBS status + IAP adequacy + intrapartum fever / chorioamnionitis + ROM duration + maternal HSV / hepatitis B / HIV / VDRL status; infant exam (perfusion, tone, fontanelle, rashes).
    inputs: maternal_gbs_status_and_iap_adequacy, maternal_intrapartum_fever_or_chorioamnionitis, duration_of_rom_hours, maternal_herpes_lesions_or_history, hr_neonate, rr_neonate, spo2_pre_and_post_ductal
    advance: Maternal-infant risk profile + infant exam documented
  4. 4RED_FLAGS
    Hemodynamic instability (hypotension by GA threshold, capillary refill > 3 s, mottling, lactate > 4) → ICU + fluid resuscitation + vasoactive. Respiratory failure / apnea + bradycardia → intubation. CNS features (seizure, bulging fontanelle, meningismus) → LP + meningitic-dose antibiotics. Active maternal HSV lesions or vesicular rash on infant → empirical acyclovir.
    inputs: temperature_neonate, sbp_neonate, maternal_herpes_lesions_or_history, cns_signs_seizure_bulging_fontanelle
    actions: protocol.septic_shock
    advance: Red flags actioned; empiric antibiotics within 60 min
  5. 5INITIAL_WORKUP
    Blood culture (≥ 1 mL pre-antibiotic); CBC with diff + I:T ratio; CRP baseline; glucose; lactate; CXR; ampicillin + gentamicin within 1 h. Cultures BEFORE antibiotics if possible without delaying treatment past 60 min (Puopolo 2018).
    inputs: cbc_with_diff_neonate, blood_culture_pre_antibiotic, crp_serial, glucose_neonate, cxr_neonate
    actions: panel.cbc, panel.inflammation, panel.abg
    advance: Cultures sent; first-dose antibiotics in; CXR obtained
  6. 6BRANCHING_WORKUP
    LP if culture-positive sepsis, CNS features, persistent positive blood cultures, or culture-negative but high clinical suspicion (Puopolo 2018). HSV PCR (blood, CSF, surface swabs) if maternal HSV or vesicular rash. UA / urine culture is low-yield in EOS (< 72 h) but appropriate for late-onset (> 72 h) — out of scope for this acute EOS engine.
    inputs: csf_studies_if_LP, lactate_neonate
    actions: workup.bacterial_meningitis
    advance: Source-directed workup complete or empirically covered
  7. 7DIFFERENTIAL
    EOS vs RDS (no maternal sepsis risk factors; classic preterm ground-glass CXR — route to neonatal.respiratory-distress-syndrome.v1). EOS vs PPHN (pre-/post-ductal gradient; echo). EOS vs CHD (congenital cyanotic vs ductal-dependent — echo + hyperoxia test). EOS vs HIE (history of asphyxia / acidosis — route to neonatal.hypoxic-ischemic-encephalopathy.v1). EOS vs metabolic (inborn errors with shock-like presentation — acidosis + hyperammonemia + lactate).
    advance: Mimics excluded or co-managed; empiric antibiotics continued
  8. 8RISK_STRATIFICATION
    Kaiser EOS calculator (Kuzniewicz 2017 PMID 28241253) for ≥35 wk asymptomatic infants — combines maternal factors (chorioamnionitis, GBS, IAP, ROM, fever) with infant clinical status to drive observation-vs-cultures-vs-antibiotics. Term-symptomatic + preterm → empiric antibiotics per Puopolo (no calculator branch). Calculator id `calc.kaiser_eos_calculator` not yet registered in clinical-tools-registry — rendered narratively this pass.
    inputs: gestational_age_weeks
    advance: Stratification + decision (observe / culture / antibiotics) documented
  9. 9TREATMENT
    Empiric ampicillin + gentamicin within 60 min. Acyclovir added if HSV concern (max 60 mg/kg/day). Pathogen-directed narrowing once culture + susceptibilities back at 36-72 h. AVOID ceftriaxone in < 28 d (bilirubin displacement); use cefotaxime if a cephalosporin is needed. Supportive: IV maintenance fluids, glucose control, ventilation as needed, vasoactive per septic-shock protocol.
    inputs: birthweight_grams, postnatal_age_hours
    advance: Empiric regimen in; supportive care titrated
  10. 10DISPOSITION
    Symptomatic / preterm / culture-positive → NICU (icu). Asymptomatic / term / culture-negative observation per Kaiser EOS calculator → inpatient (well-baby / mother-baby unit) with serial exams. Stable post-EOS rule-out (48-72 h negative culture + improving CRP + reassuring exam) → discharge with peds follow-up 24-48 h.
    inputs: gestational_age_weeks
    advance: Level of care assigned
  11. 11MONITORING
    Continuous cardiorespiratory monitoring + SpO₂ + temperature. CBC + CRP at 24 + 48 h. Blood culture follow-up at 36-48 h. Gentamicin trough before 3rd dose (target < 2 mcg/mL). Repeat LP at 48 h if culture-positive meningitis. Glucose q4-6h. Stop antibiotics at 36-48 h if culture-negative + reassuring infant + normalized CRP / CBC per Puopolo 2018 stewardship.
    inputs: cbc_with_diff_neonate, crp_serial, blood_culture_pre_antibiotic
    actions: panel.cbc, panel.inflammation
    advance: Stewardship + de-escalation per culture results
  12. 12FOLLOWUP
    Pediatric follow-up within 24-48 h of discharge for high-risk; 1-week visit for all. Hearing screen (AABR) — sensorineural hearing loss is a sequela of bacterial meningitis. Neurodevelopmental peds at 6-12 mo for culture-positive meningitis or septic-shock survivors (Bayley III / ASQ-3). Immunization catch-up per ACIP schedule.
    advance: Outpatient plan + hearing screen + neurodev follow-up scheduled