Biliary atresia
NEW pediatric / neonatal dossier (lane-D 2026-05-26). Manifest authored at prisma/seed/manifests/peds.biliary-atresia.v1.ts. All RxCUIs RxNav-verified (forward + reverse) on 2026-05-26: ursodiol 11065, phytonadione (vitamin K1) 8308, cholecalciferol 2418, ergocalciferol 4018, vitamin E 11256, phenobarbital 8134, methylprednisolone 6902 (cited but DO NOT use routinely per Alonso START 2018). Vitamin A (retinol palmitate 11246) verified; listed as non_pharm because pediatric liquid formulations vary by product. PMIDs verified via PubMed MCP on 2026-05-26: 27429428 Fawaz NASPGHAN/ESPGHAN 2017 (canonical cholestasis guideline applies to biliary atresia at 25-40% of neonatal cholestasis); 19914515 Hartley Lancet 2009 (biliary atresia review with Kasai outcomes); 30244988 Alonso START 2018 (steroids in biliary atresia post-Kasai — no benefit + growth impairment); 25419594 Venkat 2014 (total bilirubin best predictor of fat-soluble vitamin deficiency in biliary atresia). Workup IDs omitted as not in registry: biliary_atresia, neonatal_cholestasis, hida_scan, kasai_post_op — used safe registry workups: workup.pediatric_fever (sepsis overlay), workup.encephalopathy (hepatic encephalopathy DDx). Calculator gaps: Kasai-age outcome calc + PELD score for pediatric transplant priority not in registry; used calc.bsa + calc.meld_na (adult-validated, supplemental). Subacute pediatric/neonatal engine: outpatient + inpatient + transition setting playbooks. TIME-CRITICAL Kasai window emphasized throughout. Surgical mainstay (Kasai hepatoportoenterostomy < 60 days) listed as non_pharm; medical adjuncts include ursodiol, fat-soluble vitamins (A, D, E, K), MCT-enriched formula, phenobarbital ONLY as HIDA priming, NO routine post-Kasai steroids. Cholangitis prophylaxis varies by center (some use TMP-SMX); listed as non_pharm note. Population includes both pediatric and neonatal (per campaign requirement). Sibling differentiation from peds.hyperbilirubinemia-neonatal.v1 (conjugated vs unconjugated) and peds.reye-syndrome.v1 (chronic cholestasis vs acute hepatic failure).
Entry points (5)
- symptomPersistent jaundice in infant > 2 weeks of age — direct bilirubin evaluation mandated (Fawaz NASPGHAN 2017 PMID 27429428)persistent_jaundice_infant_over_2_weeks
- symptomAcholic / clay-colored stools in infant — biliary atresia red flag (Fawaz NASPGHAN 2017; NASPGHAN stool color cards)acholic_clay_colored_stools_infant
- lab_abnormalityDirect bilirubin > 1.0 mg/dL (> 17 micromol/L) in infant — cholestatic jaundice (Fawaz NASPGHAN 2017)direct_hyperbilirubinemia_infant
- symptomDark urine + pale stools in infant — obstructive cholestasis pattern (Hartley Lancet 2009 PMID 19914515)dark_urine_pale_stools_infant
- symptomHepatomegaly + failure to thrive in infant — biliary atresia / cholestasis differential (Fawaz NASPGHAN 2017)hepatomegaly_with_failure_to_thrive_infant
Required inputs (19)
- age_in_daysrequireddemographic • used at FRAMEKasai window < 60 days for best native-liver survival; significant decline 60-90 days; very poor > 90 days (Hartley Lancet 2009 PMID 19914515)
- weightrequireddemographic • used at CONTEXTAll dosing (ursodiol, fat-soluble vitamins, phenobarbital) weight-based (AAP Red Book 2024-2027, Lexicomp Peds)
- gestational_agerequireddemographic • used at CONTEXTPreterm biliary atresia presents later; differential of TPN cholestasis broader in NICU graduates (Fawaz NASPGHAN 2017)
- feeding_history_breast_vs_formularequiredhistory • used at CONTEXTBreastfeeding jaundice can mimic; persistence beyond 2 weeks always requires direct bilirubin (Fawaz NASPGHAN 2017)
- stool_color_historyrequiredhistory • used at FRAMEAcholic / clay-colored stools red flag; stool-color cards distributed at well-child visits per NASPGHAN (Fawaz NASPGHAN 2017)
- family_history_liver_diseaserequiredhistory • used at CONTEXTAlagille syndrome (autosomal dominant JAG1 / NOTCH2), alpha-1 antitrypsin deficiency, progressive familial intrahepatic cholestasis (Fawaz NASPGHAN 2017)
- torch_risk_factorsrequiredhistory • used at CONTEXTCMV, syphilis, toxoplasmosis, rubella, herpes — cholestasis mimics (Fawaz NASPGHAN 2017)
- total_and_direct_bilirubinrequiredlab • used at INITIAL_WORKUPDirect bilirubin > 1.0 mg/dL (> 17 micromol/L) defines cholestasis; total bilirubin also tracks (Fawaz NASPGHAN 2017)
- lft_ast_alt_ggt_alkphosrequiredlab • used at INITIAL_WORKUPGGT often markedly elevated in BA; AST/ALT modest; alkaline phosphatase elevated (Fawaz NASPGHAN 2017)
- coag_pt_inrrequiredlab • used at INITIAL_WORKUPVitamin-K-dependent coagulopathy from cholestasis-induced fat malabsorption (Venkat 2014 PMID 25419594)
- cbc_with_diffrequiredlab • used at INITIAL_WORKUPAnemia + thrombocytopenia from splenic sequestration if late presentation with cirrhosis (Fawaz NASPGHAN 2017)
- alpha_1_antitrypsin_level_phenotyperequiredlab • used at INITIAL_WORKUPAlpha-1 antitrypsin deficiency is differential (Fawaz NASPGHAN 2017)
- tsh_t4requiredlab • used at INITIAL_WORKUPHypothyroidism can cause cholestasis (Fawaz NASPGHAN 2017)
- urinalysis_culturerequiredlab • used at INITIAL_WORKUPUTI can cause cholestasis (Fawaz NASPGHAN 2017)
- torch_workuprequiredlab • used at INITIAL_WORKUPCMV PCR, RPR, toxoplasmosis IgM, rubella IgM, HSV PCR if vesicular lesions (Fawaz NASPGHAN 2017)
- sweat_chloriderequiredlab • used at INITIAL_WORKUPCystic fibrosis can cause cholestasis (Fawaz NASPGHAN 2017)
- fasting_abdominal_ultrasoundrequiredimaging • used at INITIAL_WORKUPTriangular cord sign, absent or abnormal gallbladder, polysplenia syndrome — first-line imaging (Hartley Lancet 2009)
- hida_scan_with_phenobarbital_primingimaging • used at BRANCHING_WORKUPPhenobarbital priming 5 mg/kg/day PO × 5 days then HIDA scan; no excretion into bowel by 24 h supports biliary atresia (Hartley Lancet 2009)
- liver_biopsyimaging • used at BRANCHING_WORKUPBile-duct proliferation, fibrosis, bile plugs — histologic confirmation (Fawaz NASPGHAN 2017)
12-phase flow (12)
- 1FRAMEConfirm cholestatic jaundice: total bilirubin elevated + direct bilirubin > 1.0 mg/dL (> 17 micromol/L) in infant beyond 2 weeks of age (Fawaz NASPGHAN 2017 PMID 27429428)inputs: age_in_days, stool_color_history, total_and_direct_bilirubinadvance: Direct hyperbilirubinemia confirmed + pediatric hepatology referral initiated
- 2ENTRYInfant > 2 weeks with persistent jaundice + clay-colored / acholic stools + dark urine; failure of physiologic jaundice to resolve (Fawaz NASPGHAN 2017)inputs: age_in_daysadvance: Entry trigger captured + direct bilirubin ordered
- 3CONTEXTAge (presentation usually 4-8 weeks; Kasai window < 60 days), birth history, feeding history, stool color cards, family history of liver disease, TORCH risk factors (Fawaz NASPGHAN 2017)inputs: weight, gestational_age, feeding_history_breast_vs_formula, family_history_liver_disease, torch_risk_factorsadvance: Context complete + diagnostic workup launched
- 4RED_FLAGSDirect hyperbilirubinemia + acholic stools + hepatomegaly + failure to thrive + coagulopathy + ascites + splenomegaly (signs of established cirrhosis at presentation = late presentation, worse outcome) (Fawaz NASPGHAN 2017; Hartley Lancet 2009)inputs: coag_pt_inradvance: Severity / late-presentation status assigned
- 5INITIAL_WORKUPTotal + direct bilirubin; LFTs (AST, ALT, GGT, alkaline phosphatase); coags (PT/INR); CBC; metabolic panel; alpha-1 antitrypsin level + phenotype; TSH + T4; urinalysis + culture; TORCH workup; sweat chloride; fasting abdominal ultrasound (triangular cord sign) (Fawaz NASPGHAN 2017 PMID 27429428)inputs: total_and_direct_bilirubin, lft_ast_alt_ggt_alkphos, coag_pt_inr, cbc_with_diff, alpha_1_antitrypsin_level_phenotype, tsh_t4, urinalysis_culture, torch_workup, sweat_chloride, fasting_abdominal_ultrasoundactions: workup.pediatric_fever, workup.encephalopathy, panel.lft, panel.cbc, panel.coag, panel.metabolic, panel.thyroid, panel.uaadvance: Baseline workup complete + pediatric hepatology consultation
- 6BRANCHING_WORKUPHIDA scan with phenobarbital priming 5 mg/kg/day PO × 5 days (no excretion into bowel by 24 h supports BA); MRCP if available; intraoperative cholangiogram (gold standard); liver biopsy (bile-duct proliferation, fibrosis, bile plugs); next-generation sequencing for Alagille / PFIC / other genetic causes (Fawaz NASPGHAN 2017; Hartley Lancet 2009)inputs: hida_scan_with_phenobarbital_priming, liver_biopsyadvance: Diagnostic workup complete + surgical consultation for Kasai consideration
- 7DIFFERENTIALBiliary atresia (25-40% of neonatal cholestasis) vs Alagille syndrome (JAG1 / NOTCH2) vs progressive familial intrahepatic cholestasis 1/2/3 vs alpha-1 antitrypsin deficiency vs cystic fibrosis vs galactosemia vs tyrosinemia vs neonatal hemochromatosis vs TPN-associated cholestasis vs TORCH infections vs neonatal sepsis with cholestasis (Fawaz NASPGHAN 2017)advance: Differential narrowed + surgical decision
- 8RISK_STRATIFICATIONAge at Kasai (best outcomes < 60 days; significant decline 60-90 days; very poor > 90 days); polysplenia syndrome (biliary atresia splenic malformation syndrome — BASM); cirrhosis at presentation (Hartley Lancet 2009)inputs: age_in_daysadvance: Risk tier documented + surgical timing decision
- 9TREATMENTStep 1: Kasai hepatoportoenterostomy < 60 days of life (surgical mainstay; non_pharm). Step 2: Post-Kasai ursodeoxycholic acid 10-20 mg/kg/day PO BID-TID (max 30 mg/kg/day) for choleresis. Step 3: Fat-soluble vitamin supplementation (vitamin A, D, E, K) per total bilirubin trend (Venkat 2014 PMID 25419594). Step 4: MCT-enriched formula for fat absorption. Step 5: Phenobarbital 5 mg/kg/day PO × 5 days ONLY as HIDA-scan priming (NOT for routine choleresis post-Kasai). Step 6: NO routine post-op steroids (Alonso START 2018 PMID 30244988 — no benefit + growth impairment). Step 7: Liver transplant referral at diagnosis. (Fawaz NASPGHAN 2017; Hartley Lancet 2009)inputs: weightadvance: Kasai performed (or transplant pathway if late presentation) + post-op plan documented
- 10DISPOSITIONAdmission for diagnostic workup + Kasai surgical evaluation; pediatric liver transplant center transfer (Fawaz NASPGHAN 2017)advance: Disposition + transplant-center transfer documented
- 11MONITORINGTotal bilirubin trend post-Kasai (clears to normal at 3 mo in ~ 60% of Kasai successes per Hartley 2009 Lancet); fat-soluble vitamin levels per total bilirubin (Venkat 2014 PMID 25419594); growth + nutrition; signs of portal hypertension + cirrhosis; cholangitis surveillance (fever + bile-leak post-op) (Fawaz NASPGHAN 2017)advance: Monitoring orders documented
- 12FOLLOWUPPediatric hepatology + transplant team; surgery; nutrition; cholangitis prevention (some centers use prophylactic trimethoprim-sulfamethoxazole post-Kasai); transplant evaluation if total bilirubin remains elevated at 3-6 mo post-Kasai or progressive cirrhosis (Hartley Lancet 2009)advance: Follow-up + nutritional support + transplant evaluation plan documented