Clinical Commander

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gi.gerd.core.v1

GERD (chronic, empiric-to-maintenance)

gastroenterologychronicadultoutpatient

GERD dossier (chronic empiric-to-maintenance + Barrett surveillance). STEP 3 deepened (2026-05-16): design brief + research bundle authored (§5.5 items 1-2); §5.5.1 effect sizes wired (PPI ~85-90% vs H2RA ~50% erosive healing; PHALCON vonoprazan non-inferior/superior C-D; LOTUS fundoplication ~85% vs esomeprazole ~92% 5-yr; Barrett→EAC NDBE ~0.2-0.5%/LGD ~0.5-1%/HGD ~6-7% per yr; RFA ~80-90% dysplasia eradication); §5.5.2 Bayesian (alarm-symptom EGD test-threshold, pH-impedance AET Lyon 2.0 thresholds as reference standard, weak PPI-trial LR, EoE/achalasia/rumination pivots, gi.peptic-ulcer routing); BRANCHING_WORKUP actions reconciled to repointed workups. last_reconciled 2026-05-16 (ACG 2022 / AGA 2024 / Lyon 2018 / NICE 2024 floor). Re-promoted SCAFFOLDED→PRODUCTION (design_brief present; all completeness tiers satisfied; verified via dossier:audit). RxCUIs pending research:rxnav drug-data commit.

Entry points (7)

  • symptom
    Heartburn / pyrosis
    heartburn
  • symptom
    Regurgitation / acid reflux
    regurgitation
  • symptom
    Dysphagia (alarm symptom)
    dysphagia
  • symptom
    Chronic cough / laryngeal symptoms (extra-esophageal GERD)
    chronic_cough
  • symptom
    Non-cardiac chest pain
    chest_pain_non_cardiac
  • problem_list
    Known GERD on problem list
    gerd
  • imaging
    Barrett esophagus found on EGD
    barrett_on_egd

Required inputs (14)

  • agerequired
    demographic • used at CONTEXT
    EGD threshold for alarm symptoms; Barrett risk stratification (ACG 2022 Katz)
  • sexrequired
    demographic • used at CONTEXT
    Male sex is Barrett risk factor (AGA 2024 Barrett)
  • bmi
    demographic • used at CONTEXT
    Obesity is independent GERD risk factor; weight loss is therapeutic (ACG 2022 Katz)
  • heartburn_frequencyrequired
    symptom • used at ENTRY
    Symptom frequency guides empiric vs step-up PPI (ACG 2022 Katz)
  • alarm_symptomsrequired
    symptom • used at RED_FLAGS
    Dysphagia, odynophagia, weight loss, GI bleeding, anemia, vomiting = EGD indication (ACG 2022 Katz)
  • ppi_trial_historyrequired
    history • used at CONTEXT
    Prior PPI response defines empiric vs refractory pathway (ACG 2022 Katz)
  • duration_symptomsrequired
    history • used at CONTEXT
    Chronic heartburn >5 yr + 3 Barrett risk factors = EGD screening (AGA 2024 Barrett)
  • family_hx_esophageal_cancer
    history • used at CONTEXT
    Barrett/EAC family history raises screening priority (AGA 2024 Barrett)
  • smoking_history
    history • used at CONTEXT
    Smoking is Barrett risk factor (AGA 2024 Barrett)
  • current_medsrequired
    medication • used at CONTEXT
    NSAIDs, bisphosphonates, calcium channel blockers worsen GERD; PPI drug interactions (ACG 2022 Katz)
  • cbc
    lab • used at INITIAL_WORKUP
    Anemia screen if alarm symptoms (iron-deficiency from erosive esophagitis or Barrett) (ACG 2022 Katz)
  • egd
    imaging • used at BRANCHING_WORKUP
    EGD for alarm symptoms, refractory GERD, Barrett screening/surveillance (ACG 2022 Katz; AGA 2024 Barrett)
  • ph_impedance
    imaging • used at BRANCHING_WORKUP
    Ambulatory pH-impedance testing for refractory GERD — gold standard (Lyon Consensus 2018)
  • hrm
    imaging • used at BRANCHING_WORKUP
    High-resolution manometry pre-surgical evaluation or if motility disorder suspected (ACG 2022 Katz)

12-phase flow (12)

  1. 1FRAME
    Confirm GERD scope: typical reflux symptoms amenable to empiric PPI vs refractory GERD vs Barrett surveillance (ACG 2022 Katz)
    inputs: ppi_trial_history
    advance: pathway assigned: empiric, refractory, or Barrett
  2. 2ENTRY
    Recognize heartburn, regurgitation, dysphagia, chronic cough, or non-cardiac chest pain as GERD trigger (ACG 2022 Katz)
    inputs: heartburn_frequency
    advance: symptom trigger confirmed
  3. 3CONTEXT
    Age, sex, BMI, smoking, symptom duration, PPI history, family history of esophageal cancer, current medications (ACG 2022 Katz; AGA 2024 Barrett)
    inputs: age, sex, bmi, duration_symptoms, ppi_trial_history, current_meds
    advance: context captured
  4. 4RED_FLAGS
    Screen for alarm symptoms: dysphagia, odynophagia, unintentional weight loss, GI bleeding, iron-deficiency anemia, recurrent vomiting — all mandate EGD (ACG 2022 Katz)
    inputs: alarm_symptoms
    advance: alarm symptoms present (EGD path) or absent (empiric PPI path)
  5. 5INITIAL_WORKUP
    CBC if alarm symptoms; empiric PPI trial 8 weeks is first-line diagnostic-therapeutic maneuver for typical symptoms without alarms (ACG 2022 Katz)
    inputs: cbc
    actions: panel.cbc
    advance: empiric PPI started or EGD ordered
  6. 6BRANCHING_WORKUP
    EGD for alarm symptoms (post-test malignancy/stricture probability crosses test threshold — empiric PPI loop contraindicated), refractory GERD (failed 8 wk PPI BID), Barrett screening; ambulatory pH-impedance OFF PPI is the reference standard — acid exposure time (AET) >6% = conclusive pathological reflux, <4% normal, 4-6% inconclusive (Lyon Consensus 2.0); AET <4% + negative symptom-association → functional heartburn/reflux hypersensitivity (route away from acid-suppression escalation/surgery); HRM if motility disorder or pre-fundoplication (Lyon Consensus 2018 PMID 29437910; ACG 2022 Katz PMID 34807007)
    inputs: egd, ph_impedance, hrm
    actions: workup.dyspepsia, workup.dysphagia, workup.achalasia
    advance: EGD findings classified (erosive, NERD, Barrett, eosinophilic) or functional overlay identified
  7. 7DIFFERENTIAL
    Erosive esophagitis (LA grade A-D), NERD, Barrett esophagus +/- dysplasia, eosinophilic esophagitis, functional heartburn, achalasia, rumination (ACG 2022 Katz; Lyon Consensus 2018)
    advance: phenotype assigned
  8. 8RISK_STRATIFICATION
    LA grade A-D for erosive esophagitis (C/D = severe, high Barrett risk, mandates repeat EGD); Barrett segment length + dysplasia grade drives surveillance interval and EAC progression risk — NDBE ~0.2-0.5%/yr, LGD ~0.5-1%/yr, HGD ~6-7%/yr to esophageal adenocarcinoma (AGA Barrett surveillance guidance)
    advance: severity/Barrett risk documented
  9. 9TREATMENT
    Standard-dose PPI ×8 wk heals erosive esophagitis ~85-90% (LA A-B) vs H2RA ~50%; step-up/step-down; H2RA for mild/on-demand; vonoprazan (PCAB) non-inferior to lansoprazole and superior for severe LA C/D + maintenance (PHALCON-EE Laine Gastroenterology 2023 PMID 36228734); RFA achieves ~80-90% complete eradication of dysplastic Barrett; fundoplication vs esomeprazole comparable 5-yr remission, surgery superior for regurgitation (LOTUS); deprescribe PPI at 8 wk if no Barrett/refractory/erosive C-D (ACG 2022 Katz PMID 34807007)
    inputs: ppi_trial_history
    advance: treatment plan initiated
  10. 10DISPOSITION
    Outpatient for all non-alarm GERD; urgent EGD referral for alarm symptoms; GI referral for refractory, Barrett, surgical candidacy (ACG 2022 Katz)
    advance: disposition set
  11. 11MONITORING
    PPI step-down attempt after 8 wk; Barrett surveillance EGD intervals (no dysplasia q3-5yr, LGD q6-12mo, post-ablation q3mo then annually) (AGA 2024 Barrett; ACG 2022 Katz)
    advance: monitoring cadence set
  12. 12FOLLOWUP
    Symptom reassessment at 8 wk; lifestyle reinforcement (weight loss, head-of-bed elevation, avoid late meals); long-term PPI safety counseling (bone, Mg, C. diff) (ACG 2022 Katz; NICE 2024)
    advance: follow-up scheduled